KEGG   Rattus norvegicus (rat): 683404
Entry
683404            CDS       T01003                                 
Symbol
Rp1l1
Name
(RefSeq) retinitis pigmentosa 1-like 1 protein
  KO
K19538  retinitis pigmentosa 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    683404 (Rp1l1)
   04812 Cytoskeleton proteins [BR:rno04812]
    683404 (Rp1l1)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   683404 (Rp1l1)
Cytoskeleton proteins [BR:rno04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule-associated proteins (MAPs)
     683404 (Rp1l1)
SSDB
Motif
Pfam: DCX
Other DBs
NCBI-GeneID: 683404
NCBI-ProteinID: NP_001408014
RGD: 1586886
Position
15:42435803..42447165
AA seq 1860 aa
MNSTPGDTRDAPAPSHPAPSHRQCLLPSVAHTPSVTEVTPAKKITFLKRGDPQFAGVRLA
VHQRTFKTFSALMDELSQRMPLSFGVRSVTTPRGLHGLSALEQLQDGGCYLCSDRKPPKT
PRESGRLQRKSPPAGRSQVSQGGHEAPETSSYSWKNPMAPRRLTLVKNGYPGCQQTVVLS
HKNTRNLAGFLSKASELLRFPVKQVYTTHGKKVDSLQTLLDGPSLLVCAGNEAFRRLEME
NDRGNRTRMVSGVTARSERGCWGPNAKQSVIHSRGRSGGKLRQFSLMSERSGLSDHPASG
HQAWAGPALDRCPQDTPAPPGSLVAADDVEKKVCMNEDGSLSVEMKVRFQLLGEDTLRWS
QRVGHASVFTAATGEDRDLREADRLCCRQEGYPWGVLEPGAQGLGPHDGGCQGAFDVGQQ
SRPSYDIWRNPLTAPEGTGPTPRRRWGLAKLSRCWREGTNDRKGHDKANASPVSTPRHPG
SVQPGSCCLWTPEVETGSDTLRPVSSASSRSETDLESGEDPCLEDTGPCGLRLQTQSIDR
ALSDTSASAESREESCEGGGQLHRGSSQARVMASQGQATRGDNPCISTQRHLSLNHTGLQ
TKKDRQSASCQEVRGDPVLRLPLVPRHSGSRDTQRDALPAPACAPAQRRQRKQKRPAGVV
CLPSVSIPHQVAQKGHARQCHCCRDTQSSGDTALQMTMPMEREQACPGSPAPQFPSNSPR
AGNQAPECLRPPFSSSLDFQEPQATSIAMSDSDCMSSFCHPSTRSAEPAEDSKCQAPSST
PTPIHRGEVGYLWDKAGSTPEPFSSSVLLNRWPEADLRTYQNFGCLQVAPTSTLATPSSQ
TQASISEACLGDNSSCPTPPQDQICSRREPASSNSTHSDHGRADGYTGPRRTLPGMPLGI
RGSLEEQEGDGGVTPSALPYTSPDAVVREWLGNIPEKPALMTYEVADETIEVPSEGPEGP
KEDLGDGCSLKVFGELTQARQQMLEGVTDEHPEPAGVPAGPGSVCCKLGGDMHSDATSVE
RLKAPAEAGTGEGTTVERGVSLCALPTRVSASTQIMKALLGSKPGRPSSLPEVSSTVAQR
LSCSAGALIACLAKLHFFDEDLGPLDGKRRLEESPKYQEMLNISQTLWPGSELGQGQLDF
SLRRLTSHQALLGTEDFTPTSSSGVDVSSGSGGSGEGSVPCVMDSTLASKKIDLPLKIPS
QRPDSRNQGYPEIVSPSTVSSGSQMRACTTSGEEAGKGGRKQTWGSAPEQSVENKVPEGD
AQLEETEGRARERLQENSVLGEGLPEEGTRVCSQGMLAANSRDGAGSPEDTRVPNDEVGT
DGGLWPLDGREDPTESPCHFEESNSRVSERQSAHVPELGLDVRGGKQACVKASSETRETN
TSIAHRGTLDPDPIWVSKLLKKIEKAFMAHLTDATAELRARWNLHDNNLLDQMVTELEQD
VGQRLQASTVREVRKIQSRAGRMFPEPPREALRGQSSLQTEQRRRRLQGLRNLSAFPGQG
PLSFTLEDGATLGTALGTRSGAGLVEDEFCPCEICLKKKRTPRFPKDSTTVSGAPVRKAF
DLQQILQSKKDGSSNREAMEVSPQKTGMMLSQEDPRTVQGADEKQELRLAQGLGVAEGEE
GEGKQRMRAEEDTEFSKAEGDGCHAPKEDATTKEDGKICIGTAQDGQQLEGTEIGKEETL
HQSFRDGDTSEAPARQGGHSVESQEASREGQPEVEGRNPDEKEESSWVSSEESQGRVGSE
NNSLDQEGRLQDHHQRPGPQSHHAARSSRAMSLDNCSQVSQKGSDRDFPSGDLKYNKAKN
SGVLPAERKVPMMYPESSSSEQEAPSSPRPPKQEKGEDGRSACTQVGGRVDGFGQDDLDF
NT seq 5583 nt   +upstreamnt  +downstreamnt
atgaacagcaccccaggagacacgagggatgctcctgccccaagccaccctgcaccaagc
caccggcagtgtctcctgccctctgtggctcacactccctctgttactgaagtgacacca
gccaagaagataaccttcctcaagcgaggagacccccagtttgctggggttcgcctggct
gttcaccagcgcactttcaagaccttcagcgccctaatggatgagctgtctcagcgcatg
cctctttcctttggggtgcgttctgtcaccacaccccggggattgcatggcctcagtgcc
ctggagcagttgcaagatgggggttgctacctctgctctgatagaaagccccctaaaact
cccagagagtcaggccggcttcaaaggaaaagcccccctgctgggcggtcacaggtttcc
caaggtgggcacgaagctccagaaacatcctcctattcctggaaaaatcctatggcccca
agaaggttgaccctggtaaagaatggatatcctggatgccagcagacagtggttctcagt
cacaagaataccaggaacctggcaggcttcctcagcaaagcctctgagcttctgcgcttt
cccgtcaagcaggtgtacacgacccatgggaagaaggtggactctctgcagacactcctg
gacggcccctccctgctggtatgtgctgggaatgaggccttcagacgtctggagatggaa
aatgacagagggaacaggaccagaatggtatctggtgtgactgcaaggagtgaacgtggc
tgctggggaccgaacgccaagcagagtgtcatacactcaaggggcaggtctggcggcaag
ctgcggcagttttccttgatgtcagagaggtctggtctcagtgaccatccagcatccggt
catcaagcctgggcaggtcctgctttggacaggtgccctcaggacacgcctgccccacct
ggttccttggtggctgctgatgatgtggagaagaaggtctgcatgaatgaagacggcagt
ctgtctgtggagatgaaagtccgcttccagttactgggggaggacaccctgaggtggtcc
cagagggtggggcatgccagtgtcttcacagcagccactggagaggatcgggacctgagg
gaggctgacaggctctgttgcagacaggagggctacccttggggcgtcttagaacctggg
gcacagggactgggtccccatgatggaggatgccagggagcctttgatgtgggccagcag
tcacggcccagctatgacatatggaggaatcccctgacagcccctgagggcacagggcca
actcctcgtaggagatggggtctggctaagctctctagatgctggagagagggaaccaat
gataggaaaggacatgacaaggctaatgccagcccagtctcaactcccaggcaccctgga
agtgtccagccaggctcctgttgtctttggactcctgaagttgaaacaggcagtgacacc
ttgcgtccagtctcctcagcttcttcccggagtgagactgacctggaatctggtgaggac
ccctgcctagaggacaccggaccctgtggcttgagacttcagacccaaagtatagacagg
gccctttctgatacatcagccagtgccgagtctcgtgaggagtcttgtgagggtggtggt
cagctccacagaggctcaagccaggcaagggtcatggcttcccaggggcaagccactaga
ggtgataacccctgtatttccacccagaggcacttatctttgaaccacacgggtcttcag
acaaagaaggacagacagagcgccagctgccaggaggtcaggggtgatcctgtactgaga
ctgcccctggttccacgccattctggctctcgggacacacagagagatgccctcccagct
cctgcctgtgccccggcccagcggaggcagagaaagcagaagaggccagctggtgttgtg
tgcttgcctagtgtctctatccctcaccaagtagcccagaaaggccatgccaggcagtgt
cactgttgcagggacactcagtcctcaggggacacagccttgcaaatgacaatgcctatg
gaaagagagcaagcctgcccaggaagcccggcaccacaatttccttcaaactcacccagg
gctgggaatcaggcccccgagtgtctgagacccccattctccagctctcttgattttcag
gaaccacaagccaccagcatcgccatgagtgactcagactgtatgtccagcttttgtcat
cccagcactcgctctgcagagccagcagaggatagcaagtgccaggctccctcatcaact
cctacacctatccacagaggagaggttggttatctgtgggacaaggcagggagcacccct
gagcctttctcatcctctgtgctactgaacagatggcctgaggcagatctaagaacctac
caaaatttcggctgcttacaggttgcaccgacttctacccttgcaacccctagcagtcag
acgcaggcctccatctctgaggcctgcttgggggacaatagttcctgcccaactccaccc
caggatcaaatatgttctagaagggagcctgcaagcagcaatagtacccacagtgaccac
ggtcgagccgatggctacactgggcccaggaggactcttccggggatgccccttggcatc
aggggaagccttgaggaacaggaaggggatggtggtgtgacgcccagtgctctgccttac
acctctccagatgctgtggttcgtgagtggctaggcaacatcccagaaaagccagcactc
atgacatatgaggtggcggatgagaccatagaggtgcccagtgagggcccagaaggtccc
aaggaggacctgggtgatggctgttctttgaaagtctttggggaactgactcaggccaga
cagcagatgctagaaggggttactgatgagcacccagagccagcaggagtccctgcagga
cctggttctgtgtgctgcaaactgggaggtgatatgcattcagatgcaacatcagttgaa
aggctcaaggctcctgcagaagctggaacaggagaagggaccacagtggagcgtggtgtg
agcctgtgtgcactccccaccagggtctcagcctctacacagatcatgaaggccctgctg
ggctccaagccaggccggcccagcagtctaccagaagtctctagcacagtagcccagaga
ctcagctgctcggctggggccctcattgcctgccttgccaagctccatttttttgatgag
gatctgggacctctggatggcaaacggaggcttgaagagtcccctaagtaccaggagatg
ctcaacatctcccagacgctgtggcctggaagtgagcttgggcagggccagctggatttc
agcctcaggaggctcacttcacaccaggctctgctggggactgaggacttcactcccacc
tcctcctctggcgtggacgtgagcagtggctctggaggctcaggtgagggcagcgtgccc
tgtgtcatggatagtaccctggcttccaagaagatagatttgcctttgaaaatcccctct
caaaggcctgattccaggaaccaggggtacccagagatagtgagtccttccacagtctca
tccggctcccagatgagggcttgtaccaccagcggggaagaggcaggcaaaggaggcagg
aagcagacgtggggcagtgccccagaacagtcagtcgaaaacaaggtgccggaaggggat
gcacagttagaagaaacagaagggagagcaagagaaaggctacaggaaaacagtgtcctc
ggagaagggcttccagaagaagggactagggtctgcagccagggaatgcttgcagctaac
tctcgagatggagcaggttctccagaagacacaagagtgccaaacgatgaagtaggaact
gatggaggactgtggcccctagatgggagagaggatcccacagagtccccttgccatttc
gaggagagcaactcaagggttagtgagcgtcaaagtgctcacgtgccggagctgggattg
gacgtaaggggcggcaagcaagcctgcgtcaaggccagctcagaaaccagggagacgaac
acatccatagcccacaggggaactctggaccctgacccaatctgggtgtccaagctgctg
aagaagatagagaaagcctttatggctcacctaactgatgccacagctgaactccgagcc
cgatggaatctccatgacaacaacctgctggaccagatggtaacagagctggagcaggat
gtgggccagcggctgcaggcaagcactgtcagggaagtcaggaagatccagagccgggca
gggaggatgtttccagagcccccccgggaagccctcagaggccagtcttctctacaaaca
gagcaacgtcggcgtcgcctccagggcctgcgtaacctgtcggccttccctggccagggc
cccctctccttcactctggaggatggggccactctgggcacagccttagggaccaggtca
ggtgcagggcttgtggaggatgagttctgtccctgtgaaatctgtctgaagaagaagagg
acccctagattcccaaaggatagcacaacagtctctggtgcacccgtcagaaaggccttt
gacctacagcaaattctacagagcaaaaaggacggaagtagcaatagagaggccatggag
gtgtcccctcagaagacagggatgatgttgtctcaagaggaccccagaactgtccaggga
gctgatgagaagcaagaactgaggttggcacaagggcttggggtagctgagggagaggag
ggggaagggaagcagaggatgagagcagaggaggatactgagttttcaaaagcagaagga
gatggttgccatgcaccaaaagaggatgcaaccaccaaggaagatgggaaaatctgcatc
ggcactgcccaagatggccagcagttagaggggactgagatcggaaaggaggaaaccctg
caccagagctttagagatggagacacttctgaggctccagcaagacagggaggccactcg
gtggagagtcaggaagcttccagagaagggcagcccgaggtagaaggcagaaatccagat
gaaaaggaagaaagctcttgggtaagctcagaagagagccagggaagggtgggttctgaa
aacaacagcctagaccaagaggggaggctccaggaccaccatcaaaggccaggcccccag
agccaccatgcagcacgctcctccagggcaatgtctctggacaactgctcacaggtgtct
cagaagggctcagacagagactttccaagtggagacctcaagtacaacaaagccaagaac
agtggggtcttgcctgcagagaggaaagtccccatgatgtatccagagagttcctcttct
gagcaagaagccccctccagcccgaggcctccaaagcaggaaaaaggggaagatggacgg
tcagcttgtacccaggttgggggtagggtagatggctttggccaggatgacttagatttc
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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