KEGG   Rattus norvegicus (rat): 684148
Entry
684148            CDS       T01003                                 
Symbol
Lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform 1
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    684148 (Lsm2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    684148 (Lsm2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    684148 (Lsm2)
   03041 Spliceosome [BR:rno03041]
    684148 (Lsm2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     684148 (Lsm2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     684148 (Lsm2)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    684148 (Lsm2)
 Complex C
  U2 snRNP components
    684148 (Lsm2)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 684148
NCBI-ProteinID: NP_001004073
RGD: 1598536
Ensembl: ENSRNOG00000048725
Vega: OTTRNOG00000001815
UniProt: A6KTP7 M0R7N1
Position
20:complement(3848120..3853298)
AA seq 131 aa
MVFLGKLPASPRESPRAPGENGKLVLHFRAGDQDFVRLFYSFFKSLVGKDVVVELKNDLS
ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
AARKEALQQKQ
NT seq 396 nt   +upstreamnt  +downstreamnt
atggtttttttggggaaacttccagcaagtccaagagaaagcccacgggcgccgggggag
aacggaaagctagtcttgcatttccgtgctggagatcaggattttgtgaggctcttctac
tcctttttcaagtcccttgtgggcaaggatgtagtcgtggaactcaagaatgatctgagc
atctgtggaaccctgcactctgtggaccagtacctcaatatcaaactaaccgacatcagt
gtcacagaccctgaaaaatatcctcacatgttatccgtcaagaactgcttcatcaggggc
tcggttgtccgctacgtgcagctgccagcagacgaggtggacacacagctgttgcaggat
gcagcaaggaaggaagcccttcagcagaaacagtga

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