KEGG   Rattus norvegicus (rat): 685179
Entry
685179            CDS       T01003                                 
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    685179 (Smarcc2)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    685179 (Smarcc2)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    685179 (Smarcc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    685179 (Smarcc2)
   03036 Chromosome and associated proteins [BR:rno03036]
    685179 (Smarcc2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     685179 (Smarcc2)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    685179 (Smarcc2)
   PBAF complex
    685179 (Smarcc2)
   GBAF(ncBAF) complex
    685179 (Smarcc2)
SSDB
Motif
Pfam: SWIRM-assoc_2 SWIRM-assoc_3 SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 Chromo
Other DBs
NCBI-GeneID: 685179
NCBI-ProteinID: NP_001414181
RGD: 1597704
Ensembl: ENSRNOG00000031135
Position
7:1466223..1494627
AA seq 1247 aa
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVYP
APGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDEVNSPDADRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQTKSADLHEDNVTEQ
THHIIVPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKPPQGRQVDADTKAGRKGKELDDLVPEAAKGKPELQGSASQQMLNFPDKGKEKP
ADMQNFGLRTDMYTKKNIPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPE
RIEESGTEEARAESQAADEKKEPKEPREGGGAVEEEAKEEISEAPKKDEEKGKEADSEKE
SEKSDGDPIVDPEKDKEPTEGQEEGLKEVAEPEGERKAKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMQQQPPPPPPPPPPPALPPGSQPIPPTGAAAPATVH
GLAVAPASVASAPPGGGAPPGTLGPSEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPG
PHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGLPLPPPAAPSIIPFGSLADS
ISINLPPPNLHGHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAA
AQSPAIVAAVQGSLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq 3744 nt   +upstreamnt  +downstreamnt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacaa
gcagaaccaccaaccaacaagtctctgtctagcctggtggtgcagttgctccagtttcag
gaagaggtttttggcaaacatgtcagcaacgcaccgcttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggatccctgtgccatattcttgcagctgcctacaaattc
aagagtgaccagggatggcggcggtacgatttccagaatccatcacgtatggaccgcaac
gtggaaatgtttatgaccattgagaagtccttggtacagaacaattgcctgtctcgacct
aacattttcctgtgcccagaaattgagcccaaactgctagggaaattaaaagacattgtt
aaaagacaccagggaaccatttctgaggacaagagcaatgcctcccatgttgtgtatcct
gccccagggaacttagaggaagaggaatgggtacggccagtcatgaagagggataaacaa
gttctcctccactggggctactatcctgacagctatgacacgtggatcccagccagtgaa
attgaagcatctgtggaggacgctcccactcctgagaaacctaggaaggtccatgcaaag
tggatcctcgacactgacacgttcaatgagtggatgaatgaggaagactatgaagttagt
gacgacaaaagcccagtctcccgcagaaagaagatctcagccaagacgctgacagatgag
gtaaacagcccggatgcagacagacgggacaagaagggggggaactataagaagaggaaa
cgctctccctctccttcgccaaccccagaagctaagaagaaaaatgctaagaaaggaccc
tccacaccttacaccaagtcaaagcgagggcacagagaggaggagcaagaagacctgaca
aaagacatggatgagccctctccagtcccaaatgtggaagaggtgacactccccaaaaca
gtcaacactaaaaaggactccgagtcagcaccagtcaaaggcggcaccatgactgacctg
gatgaacaggacgacgaaagcatggagaccacgggcaaggatgaggacgagaacagcacc
ggcaacaaaggggagcagaccaagagcgcggacctgcacgaggacaacgtgacagagcag
acacaccacatcatcgtccccagctatgctgcctggtttgactacaacagtgtccatgcc
attgagcggagggctcttcctgagttcttcaacggcaagaacaagtccaagactccagag
atctacctggcatatcggaacttcatgattgacacttaccggctgaacccccaggagtat
ctaacatccactgcctgtcggcggaacttggcgggtgatgtctgcgctattatgagggtc
cacgccttcctggaacagtggggtcttattaactaccaggtagacgctgagagtcgacca
accccaatggggcctccacccacctctcacttccatgtcttggcggacacaccatcaggg
cttgttcctcttcagccaaagcccccacagggccgccaggttgatgctgataccaaggct
gggcggaagggcaaagagctggatgacctggtgccagaggcggctaagggcaagccagag
ctgcagggctctgcttcccagcagatgctgaacttccctgataagggcaaggagaagcca
gcagacatgcagaactttgggctgcgcacagacatgtacaccaagaagaacatcccctcc
aagagcaaagctgcagctagtgccactcgggaatggacagagcaggagacattgctgctc
ttggaggctctggaaatgtacaaggacgactggaacaaagtgtctgagcatgtgggaagc
cgcacgcaggatgagtgcatcttgcatttccttcgccttcccattgaagacccatacctg
gaggactcagaggcctctctaggccctctggcctaccagcccatccccttcagtcagtca
ggcaaccctgttatgagcactgttgccttcctggcctctgtcgtcgatccccgagttgcc
tctgctgctgcaaagtcagccctagaagagttctcaaaaatgaaggaagaggtgcccaca
gccttggtggaagcccatgtgcgcaaggtagaagaagcagccaaagtcacaggcaaggca
gacccagctttcggtctggagagtagcggcattgcagggacggcctctgacgagcctgag
cgcattgaggaaagcgggactgaggaggcacgggcggagagccaggcagcggatgagaag
aaggagccaaaggaacctcgggaaggaggaggtgctgtagaggaagaagcaaaggaggaa
ataagtgaagctcccaagaaagatgaagagaaagggaaagaagcggacagtgagaaggag
tcagagaagagtgacggggacccaatagtcgatccagagaaagacaaggagccgacggaa
gggcaggaggaagggctgaaggaagttgcagagccagagggggagaggaaagccaaggtg
gagcgcgacattggtgaaggcaacctgtccacagctgcggccgctgccctggctgctgct
gcagtcaaggccaagcacttggcagctgtcgaggagaggaagatcaagtctttggtggct
ctgttggtggagacccagatgaagaaactagagatcaaactccgacattttgaggaactg
gagacgataatggaccgggagcgagaagcgctggaatatcagaggcagcagctcctggcc
gaccggcaagccttccacatggagcagctgaagtatgcagagatgagggcgcggcagcaa
cacttccagcagatgcagcagcagccgccgccgccgccgccgccaccgccgccgccagcc
ctgcccccaggctcccagcccatcccccccaccggggccgcggcacccgcgacagtccac
ggtctagctgtagctccagccagtgtggcctccgctcctcctggcggtggggcccctcca
ggaaccttgggcccttctgaacagatcgggcaggcagggacaactgcagggccacagcag
ccacaacaagctggagcccctcagcctggggcagtcccaccaggggtacccccccctgga
ccccatggcccctcaccgttccccaaccaacaaactcctccctcaatgatgccaggggca
gtgccaggcagcgggcacccaggcgtggcgggtaatgctcctttgggtttgcctttcggc
ttgccgcttcctccccctgctgctccatccatcatcccattcggtagtctagccgactcc
attagtattaaccttccccctcctaacctgcatggtcaccaccatctcccgtttgccccg
ggcactatccccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctg
ccggcgaccaccaccatgccatcttccttgcctctcgggccggggctcggatcggccgca
gcccagagccctgccattgtggctgctgttcagggcagcctcctgcccagtgccagccca
ctgccagacccaggcaccccgctgcctccagaccccacagctccgagcccaggcacagtc
acccctgtgccacccccacagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (12)   
   RefSeq(pep) (12)   
DNA sequence (12)   
   RefSeq(nuc) (12)   
Protein domain (7)   
   Pfam (7)   
All databases (44)   

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