KEGG   Rattus norvegicus (rat): 686505
Entry
686505            CDS       T01003                                 
Symbol
Atg4d
Name
(RefSeq) cysteine protease ATG4D
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04136  Autophagy - other
rno04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    686505 (Atg4d)
   04136 Autophagy - other
    686505 (Atg4d)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    686505 (Atg4d)
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    686505 (Atg4d)
   03029 Mitochondrial biogenesis [BR:rno03029]
    686505 (Atg4d)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   686505 (Atg4d)
Membrane trafficking [BR:rno04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    686505 (Atg4d)
Mitochondrial biogenesis [BR:rno03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    686505 (Atg4d)
SSDB
Motif
Pfam: Peptidase_C54
Other DBs
NCBI-GeneID: 686505
NCBI-ProteinID: NP_001094483
RGD: 1596392
Ensembl: ENSRNOG00000047625
UniProt: M0R5T6 A6JNQ6 B4F756
Position
8:28083902..28093491
AA seq 473 aa
MNSVSPAAAQYRSGSPEDARRPDCRRPRGQTRIPDPSNLGPSGSGVAALGSTGTDPAEPD
EVDKFKTKFLTAWNNVKYGWAVKSRTSFSKISSVHLCGRCYHFEGEGDIQRFQRDFVSRL
WLTYRRDFPPLAGSLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWRWVEGTGLASSEMPG
PASPSRYRGPGRRGPLRCAQGALEMEPDRWHRRIVSWFADHPQAPFGLHRLVELGQSSGK
KAGDWYGPSVVAHILRKAVESCSEVTRLVVYVSQDCTVYKADVARLVSWPDPTAEWKSVV
ILVPVRLGGETLNPVYVPCVKELLRSELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQ
PTVDVNQANFPLESFHCTSPRKMAFAKMDPSCTVGFYAGNRKEFETLCSELMRILSSSSV
TERYPMFTVAEGHAQDHSLDALCTQLSQPTLRLPCTGRLLKAKRPSSEDFVFL
NT seq 1422 nt   +upstreamnt  +downstreamnt
atgaactccgtgtcgccggctgcggcgcagtaccgcagcgggagcccggaggacgcgcgc
cggcccgattgtcgccggccgaggggacaaacccggatcccggatcccagcaaccttgga
ccttcggggtctggcgtggcagctctcggctcaactggaactgaccccgccgagcctgac
gaggtggacaagttcaaaaccaagttcctgacagcttggaacaacgtcaagtatggttgg
gcagttaaaagccggaccagcttcagcaagatctccagtgttcatctctgcgggcgatgc
taccatttcgagggagagggtgacatccagcggtttcaaagggactttgtatctcgacta
tggcttacatatcgccgggacttcccacccctagctgggagcctgacctcagactgtggc
tggggatgtatgttacgaagtggtcagatgatgctggcccagggcctgctcctgcatttt
ctgcctagagactggaggtgggtggagggcacaggattggcctcctctgagatgccaggg
ccagcctctcccagtcgataccgagggcctggtcgccgtggtcctctgcgatgcgcccag
ggtgcactggagatggaaccggatcgctggcaccggcggattgtttcctggtttgctgat
catcctcaggcccccttcggtctacatcgcctagtggaacttgggcagagctctggcaag
aaggcaggagactggtatggaccctctgtggtggcacacatcctcaggaaagcagtggag
agctgctcagaagtcacccgcctggtggtgtacgtctctcaggactgcacagtgtacaag
gcagatgtggcacgcctggtgtcctggccagatcccacagctgagtggaagtctgttgtc
atcctggtgcctgtacgactgggtggggagactcttaaccctgtgtatgtgccctgtgtg
aaggagcttctgcgctcagaactctgcctgggcattatggggggcaaacctcgacattca
ctgtacttcattggctatcaggatgactttctgctctacctggatccccactactgccag
cccacagtggatgtcaaccaggccaacttcccactggagtcctttcactgcacctcgccc
cgcaagatggcctttgccaagatggaccccagctgtaccgtggggttctatgctgggaac
aggaaggagtttgagaccctctgctcggagctgatgaggatcctcagctcctcctcagtc
acggaacgttaccccatgttcacagtggctgagggccatgctcaggaccacagcctggat
gccctctgcacccagctctcccagcccacactgcgactaccttgcacaggacgcctactc
aaggccaaaaggcccagctctgaggactttgtgtttttataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (3)   
   RefSeq(pep) (2)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (31)   

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