KEGG   Rattus norvegicus (rat): 687001
Entry
687001            CDS       T01003                                 
Symbol
Hdac9
Name
(RefSeq) histone deacetylase 9
  KO
K11409  histone deacetylase 9 [EC:3.5.1.98]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04613  Neutrophil extracellular trap formation
rno05034  Alcoholism
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    687001 (Hdac9)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    687001 (Hdac9)
  09165 Substance dependence
   05034 Alcoholism
    687001 (Hdac9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    687001 (Hdac9)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     687001 (Hdac9)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     687001 (Hdac9)
SSDB
Motif
Pfam: Hist_deacetyl HDAC4_Gln
Other DBs
NCBI-GeneID: 687001
NCBI-ProteinID: NP_001186974
RGD: 1310748
Ensembl: ENSRNOG00000004158
UniProt: E5RQ38
Position
6:complement(56489472..57351654)
AA seq 1068 aa
MHSMISSVDVKSEVPMGLEPISPLDLRTDLRMMMPVVDPVVREKQLQQELLLIQQQQQIQ
KQLLIAEFQKQHENLTRQHQAQLQEHIKLQQELLAIKQQQELLEKEQKLEQQRQEQEVER
HRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATKDTPTNGKNHSVGRHPKLWY
TAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDTKDDFPLRKTASEPNLKVRSRLKQKVAER
RSSPLLRRKDGNLVTSFKKRVFEVAESSVSSSSPGSGPSSPNNGPAGNVTENEASVLPPT
PHPEQLVPQQRILIHEDSMNLLSLYTSPSLPNITLGLPAVPSPLSASNSLKDKQKCETQM
LRQGVPLPGQYGSGIAASSSHAHVAMEGKPNSSHQALLQHLLLKEQMRQQKLLVAGGVPL
HPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQQFLEKQKQY
QQQIHMNKLLSKSIEQLKQPGSHLEEAEEELQGDQAMEERATSKDSGTGKDSSACVEDTL
GQVGAVKVKEEPVDSDEDAQMQEMECGEQAAFMQQTPLLESSHTRALSVHQARLAAAGID
GLEKHGLLSRTHSSPAPSMSPHPAADCPRQPASATGIAYDCLMLKHQCICGNSTTHPEHA
GRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTSPLDGQKLDPRTLL
GDDSRKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVR
PPGHHAEESAAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSIL
YISLHRYDEGNFFPGSGAPNEVGVGLGEGYNVNIAWTGGLDPPMGDVEYLEAFRTVVMPV
AREFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLANGRVALALEGGHDL
TAICDASEACINALLGNEPGSLEEDVLHQSVNTNAAASLQKTIEIQSKYWKSIKMVAVAR
GCALPASQLQEETETVSALASLTVDVEQPFAQEDGRTAGEPMEEEPAL
NT seq 3207 nt   +upstreamnt  +downstreamnt
atgcacagtatgatcagctcagtggacgtgaaatcagaggttcctatgggactggagccc
atctcacctttagacctaaggacagacctcaggatgatgatgcctgtggtggatcctgtc
gtccgcgagaagcaactgcagcaagagttacttcttatccaacagcagcagcaaatccag
aagcagctcctgatagccgagtttcagaagcagcacgagaatttgacaaggcagcatcaa
gcacaacttcaggagcacatcaagttacaacaggaacttctagccataaaacaacagcaa
gaactcctagaaaaggagcagaaactggagcagcagaggcaagaacaggaagtagagagg
catcgcagagagcagcagcttcctcctctcagaggcaaagatagaggacgagaaagggcg
gtggcaagcacagaggttaagcagaagcttcaagaattcctattgagtaaatcagcaacg
aaagacactccaaccaatggaaagaatcattccgtgggccgccatcccaagctctggtac
acggctgcccaccacacatcactggatcaaagctctccacccctcagtggaacgtctcca
tcctacaaatacacattaccaggagcccaagataccaaggatgatttccccttgcgaaaa
acagcctcagagcccaacttgaaggtgcggtccaggttaaaacagaaagtggcagagagg
agaagcagccccttactcaggcggaaggatggaaatcttgtcacttcattcaagaagcga
gtgtttgaggtggcagaatcctcggtcagtagcagctctccagggtcaggtcccagttca
ccaaacaatgggcctgctggaaatgttaccgaaaacgaggcttcagttctgcctcccacg
cctcaccccgagcagctggttccacagcagcgcattctgattcacgaagattccatgaac
ctgctgagtctctacacctccccgtccctgcccaatatcaccctgggacttccagcagtg
ccatccccactcagtgcttctaattccctcaaagacaagcagaagtgtgagacacagatg
ctcagacaaggtgtccctctgcccggccagtatggaagtggcattgcagcatcctccagc
catgctcatgtagcaatggagggcaaaccgaacagcagtcaccaagctctcctgcagcac
ctcctgctgaaggaacaaatgagacagcaaaagcttcttgtggctggcggagttccatta
cacccccagtctcctttggcaacaaaagaaagaatttcaccaggcattagaggtacccac
aaattgccccgccacagacccctcaatcgaactcagtctgcacctttgcctcagagcaca
ctggctcagctggtcattcagcagcagcaccagcagttcctggagaagcagaagcaatac
cagcagcagatccacatgaacaaactgctatcgaaatctattgagcaactgaagcaacca
ggcagccatcttgaagaggcagaggaggagcttcagggggaccaagccatggaagagaga
gcaacgtctaaggacagcggtaccgggaaggacagcagtgcttgtgtggaggacacactg
ggacaagttggggctgtgaaggtcaaggaggaacccgtggacagcgacgaagatgctcag
atgcaggaaatggaatgtggggagcaggctgcttttatgcaacagacgcccttgctggag
tcctcacacacgcgtgcactctcagtgcaccaggctcggctggctgcagctggcatcgat
ggattagagaaacatggactcctctccaggacccattcttctcctgcaccctccatgtca
cctcacccagccgcagactgtccccgccagcctgcctctgccactggaattgcctatgac
tgtctgatgctgaaacaccagtgcatctgtggcaattccaccacccaccctgagcatgct
gggcgaatacagagcatctggtcacggctgcaagaaaccgggctgctaaataaatgtgag
cgaattcaaggtcgaaaagccagcctggaggaaattcagcttgttcattctgaacatcac
tcactactgtatggcaccagccccctggacggacagaagctggaccccaggacactccta
ggtgatgattctcgaaaattcttttcctcgttaccttgtggtggactcggggtggacagt
gacaccatttggaatgagctgcactcgtccggtgctgcacgcatggctgttggctgtgtc
attgagctggcttccaaagtggcctcaggagagctgaagaatgggtttgctgttgtgagg
cccccaggccatcatgctgaagaatctgcagccatggggttctgcttttttaattcagtc
gcaattacggccaaatacttgagagaccaactaaatataagcaagatattgatcgtagat
ctggatgttcaccatggaaacggtacacagcaggccttttatgctgaccccagcatcctg
tacatttcactccatcgctatgatgaagggaactttttccctggcagtggcgccccgaat
gaggttggagtaggtctgggagaaggctacaatgtaaacattgcctggacaggcggcctt
gacccccctatgggagatgttgagtaccttgaagcattcaggactgtcgtgatgcctgtg
gccagagagtttgatccagacatggtcctggtttctgctggatttgatgcattggaaggc
cacacccctcccctagggggttacaaagtgacagcaaaatgctttggtcatttgacgaag
cagctgatgacattggctaatggacgtgtggcattggctcttgaagggggacatgatctg
acagccatctgtgatgcctcggaggcctgcataaatgcccttctaggaaatgagcccggg
tctcttgaggaagatgttctccaccagtctgtgaatacgaatgcagccgcttctttacag
aagaccattgaaatccaaagcaagtattggaagtcgatcaagatggtggctgttgcaagg
ggctgtgctctgcctgcttctcagctgcaagaggagacagagaccgtttctgcattagcc
tccctgacggtagatgtggaacagccatttgctcaggaagatggcagaactgctggtgag
cccatggaagaggagccagccttgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (39)   
   UniProt (1)   
   RefSeq(pep) (38)   
DNA sequence (46)   
   RefSeq(nuc) (38)   
   GenBank (4)   
   EMBL (4)   
Protein domain (2)   
   Pfam (2)   
All databases (101)   

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