KEGG   Rattus norvegicus (rat): 688518
Entry
688518            CDS       T01003                                 
Symbol
Pabpc5
Name
(RefSeq) polyadenylate-binding protein 5
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    688518 (Pabpc5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    688518 (Pabpc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    688518 (Pabpc5)
   03041 Spliceosome [BR:rno03041]
    688518 (Pabpc5)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     688518 (Pabpc5)
   mRNA cycle factors
    Stress granule specific factors
     688518 (Pabpc5)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    688518 (Pabpc5)
SSDB
Motif
Pfam: RRM_1 RRM_5 RRM_occluded RRM_7 RRM_3
Other DBs
NCBI-GeneID: 688518
NCBI-ProteinID: NP_001103836
RGD: 1587661
Ensembl: ENSRNOG00000003354
UniProt: D4A5H0 A6IVB9
Position
X:89858502..89862454
AA seq 382 aa
MGSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG
FGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPP
GVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQGKGFGVVCFSSFEEASKAVNE
MNGRVVGSKTLHVTLGQARHRW
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggggagtggggagcctaatactgctggcaagaaaaagaagtacctcaaggctgccctg
tatgtaggtgacttggatcctgatgtcacagaggacatgctctataagaagttcagacct
gctggcccactgcgcttcactagaatctgccgtgacccagtgacccgcagccccctgggt
tatggttatgttaacttccgctttcctgcagatgctgaatgggcgttgaacaccatgaat
tttgatttaattaatggtaaaccatttcgcctcatgtggtcacagccagatgaccactta
agaaagtctggagttggaaatatattcatcaaaaacttggataaatccatagacaatagg
gccctattttatttattttctgctttcgggaacattctttcctgtaaagtcgtatgtgat
gacaatggctctaagggttatgcttatgttcacttcgatagccttgctgctgccaatagg
gctatctggcacatgaatggagtccggctcaataaccgccaggtatatgttggccgattc
aaatttcctgaagagagagcagcagaagtcagaaccagagatagagcgacatttaccaat
gtttttgtgaaaaactttggtgatgacatagatgatgaaaaactaaagaaacttttcagt
gaatatgggccaactgagagtgttaaagtaataagagacgccactgggaaatctaaaggc
ttcggatttgtaagatatgaaacacatgaagctgcccaaaaggctgtgctagaactacat
ggcaagtcaatagatggaaaagtcctatgtgtagggagagcacagaagaaaattgaacgc
ctggctgaattaaggcggagatttgaacggctgaaactaaaagataaaactaggcctcca
ggagtgcctatctacattaagaacttagatgagacaatcaatgatgagaaactaaaggag
gaattctctttatttggatcaataagtcgggccaaagtgatgatggaagtggggcaaggc
aaaggttttggtgttgtctgcttttcttcttttgaagaagcttccaaagcagtgaatgag
atgaatggtcgtgtagtaggctccaagacattgcatgtcactctggggcaagccaggcac
aggtggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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