KEGG   Rattus norvegicus (rat): 689582
Entry
689582            CDS       T01003                                 
Symbol
Kdm4d
Name
(RefSeq) lysine-specific demethylase 4D
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    689582 (Kdm4d)
Enzymes [BR:rno01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     689582 (Kdm4d)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     689582 (Kdm4d)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    689582 (Kdm4d)
SSDB
Motif
Pfam: JmjC JmjN Cytochrome_cB
Other DBs
NCBI-GeneID: 689582
NCBI-ProteinID: NP_001073180
RGD: 1591045
Ensembl: ENSRNOG00000045905
UniProt: A1A5Q5 A6JN92
Position
8:complement(19561253..19586412)
AA seq 510 aa
MKTKSTCAQNPNCSIMIFRPTKEEFNDFDKYIAYMESQGAHRAGLAKVIPPKEWRARQSY
DNISNILIATPLQQVVSGQAGVFTQYHKKKKAMTVGQYRHLANSKKYQTPPHLDFEDLER
KYWKNRLYESPIYGADVSGSLFDGKTQQWNVGHLGTIQDLLEQECGIVIEGVNTPYLYFG
MWKTSFAWHTEDMDLYSINYLHFGQPKTWYAVPPEHGRRLELLAKELFPGSSQGCQAFLR
HKVALISPTVLKENGIPFGRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY
GKVASQCSCGEARVSFSMDAFVRILQPERYEMWKRGQDQAVVDHTEAMGPTSQELTTWRV
IQAPRKTWGLKHLRLRQVSRCLLPVATDSNIANNTQMCHTSRQAADSKGDEVQESDPAIA
PPYPLGLSSPGHMSTGKRGLGRRPCELGVQESTNGAPVKRRLPEGRDDRSPSPELQSQSV
TGDLIVNSDLVNPGPQHPVTASEGGLTSDP
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgaagactaagtccacctgtgctcagaatccaaattgcagcataatgatatttcgtcca
accaaagaagagtttaacgactttgacaaatacatcgcctacatggagtcccaaggggca
cacagagctggactggccaaggtcatcccgccaaaagaatggagggccaggcagtcttat
gacaatatcagtaacatcttaatagcaactcccctgcagcaagtagtctccgggcaggca
ggtgtgttcactcaataccataagaagaagaaagccatgacagttgggcagtaccggcac
ctggccaacagtaaaaaataccaaaccccaccacacctggattttgaagatttggagaga
aaatactggaagaatcgcctgtatgagtcaccaatttatggtgctgacgtcagtggctcc
ctgtttgatgggaagactcaacagtggaatgtgggccacctgggaacaattcaagaccta
ttggaacaggaatgcggcatagtgattgagggcgtcaacacgccctacctgtactttggc
atgtggaagacctcctttgcgtggcacacggaggacatggacctgtacagtatcaactac
ctgcactttggacagcccaagacctggtatgctgtaccccctgagcatggcaggcgcctg
gagctcctagccaaggaactcttcccaggcagctcccagggctgccaggccttcctgagg
cacaaggtggcgctcatctcacccactgtgctcaaggagaatggcatcccctttggtcga
atcacccaggaggctggggagttcatggtcacctttccctatggctaccacgcgggcttc
aaccatggcttcaactgtgcagaagccatcaatttcgccacgccgaggtggattgactat
ggcaaggtggcatctcagtgcagctgtggggaggccagggtgagcttctccatggatgcc
tttgtgaggatcctgcagcctgagcgatatgagatgtggaaacgaggtcaagatcaggca
gttgtggaccacacagaggctatggggcctaccagtcaggagctcaccacctggcgggtg
atccaggcaccaagaaaaacttggggcctgaagcatctccggcttcgccaggtttcacgc
tgtcttctgcctgtagccactgacagtaacattgccaacaacacccagatgtgccacacc
tccaggcaagcagcagattcgaaaggtgatgaggtccaggagtctgacccagccatagcc
ccaccatatcctctgggtctatcttctcctggccacatgtcaactggaaaacgtggtctt
ggtcgtcgcccttgtgaactaggagttcaggagtccaccaatggagctccagtcaagagg
cgacttccagaaggcagagatgacagaagtcccagcccagagcttcagtcccagtccgtg
actggagacttaatagtcaactcagaccttgtaaatcctgggccacagcatcctgtgaca
gcttctgaagggggattgacctctgacccctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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