KEGG   Rattus norvegicus (rat): 690161
Entry
690161            CDS       T01003                                 
Symbol
Hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
  KO
K15271  ATP-dependent DNA helicase HFM1/MER3 [EC:5.6.2.4]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    690161 (Hfm1)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     690161 (Hfm1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    690161 (Hfm1)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-GeneID: 690161
NCBI-ProteinID: NP_001399493
RGD: 1584010
Ensembl: ENSRNOG00000023299
Position
14:3002103..3108567
AA seq 1474 aa
MLESNDCILSMDSLFFSSPGETESFPVEEKSLDWFLPPAPLISEIPDIQELEEEIENYKL
LGERKMPNILTSNLKIINEDTNCISPTQKFHFPYNIHEQDYLNLGGLNNNDMSHTAGKLV
YGSSQKYKNHMGDESPPTKSGPGDAKLHTAAEDREGTSALKTRLSRTCGSVQECDYANGN
LSLNSHISPARLTQTKVSKEKPWNCSNRKQKLQYSTDKSKANDAFSASGIEKDIFEAPSF
SAASQPRDIQGITSNGLGSLKAVTEIPAKFRSVFKEFPYFNYIQSKAFDDLLYTDRNFVI
CAPTGSGKTVVFELAITRLLMEAPLPWLNMKVVYMAPIKALCSQRFDDWKEKFGPIGLTC
KELTGDTVMDDLFEIQHANIIMTTPEKWDSMTRKWRDNSFIQLVRLFLIDEVHVIKDENR
GPTLEVVVSRMKTVQSLSKTLENASPAPVRFVAVSATIPNAEDIAEWLSDGERPAVCLKM
DESHRPVKLQKVVLGFPSSSNQTEFKFDLALNYKVYSVIRTYSDQKPTLVFCATRKGVQQ
AASVLVKDAKFIITVEQKLRLQKSAYSIRDSKLKDTLVYGVGYHHAGMELSDRKLVEELF
TSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGAFEEYSETDILQMIGRAGRPQFDT
TATAVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAEIVLHTITDVSIALDWIRST
LLYIRALKNPSHYGFISGLNKDGIEAKLQELCLKNLKDLSSLDLIKMDEDLNFRSTEAGR
LMAWYYITFETVKKFCAISGKETLSDLISMISSCSEFLDVQLRISEKRTLNTLNKDPNRI
TIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRIAKWLSDFVTAQ
EQKFAVLLNSVILAKCFKCKLWENSQHVSKQLDKIGISLSNTMVNAGLTSFKKIEEANAR
ELELILNRHPPFGTQIKEAVMYLPKYELEAEQIARYSDTKAEILVTIILRNFEQLQTKRT
APDFHYATLIIGDADNQVVCKHKIMDSVLLKSGNWVKKIDVKRALISEDLSINLISSDYV
GLDIHQKFTVFYLGPRKFVNQTVTERSSGTGLSHSECSDRATAAGSSKRTATCRNPGNRE
CHHHCKNKHICGHDCCKIGVAQKPEAKVSAVSSYLSDLKSRDAVSSFPPAKRLKIQMNKS
QNVDLKEFGFVPRPSLSSIARSEYLNIHKLPILEQRTQHEIYGEVEEGASECRDEDFPGW
DYCAASNKRTPVMLSRHANTPGNHGVAVAEKSKSSDGPHVNSELGDEVWDDFDDESLIEV
MSFSADAEEMAVSGFGDTRDSSLGRSKLHFGRSSSRFQRDISNSFVSSPEKPDVCLSDCS
VSNFGLSSVAEFPQQAGNASLVNLQERKQLTLSPVIERMCFTHSEKIPQSPSFKEVDIFI
GNSDSKKEIDLSKYYPDDAAEEMKALLGIFNGIF
NT seq 4425 nt   +upstreamnt  +downstreamnt
atgctggaatcaaacgattgcattttatccatggattctttgtttttcagtagcccaggt
gaaactgaaagctttccagttgaggaaaaatcactggattggtttctccctccagctcca
ctgatctcagaaattccagatattcaagagttagaggaagaaattgaaaattataagcta
ttaggagaaagaaagatgcccaatatattaacatcaaacttgaagatcattaatgaagac
acaaattgtatttcaccaacacagaaattccattttccctataacatacatgaacaggat
tacctaaatttaggaggattaaataacaatgacatgtcacatacagctggcaagctagtg
tacggttcttctcaaaaatataaaaaccacatgggggatgagagtccaccgacaaagagt
ggtcctggtgatgcaaagctgcatactgctgctgaggacagagagggcacatcagcactc
aaaaccagattatctagaacatgtggcagtgtgcaggaatgtgactatgctaatggaaat
ttaagcttgaattctcatattagcccagcgagactcacccaaacaaaagtaagcaaagag
aaaccatggaactgtagcaatagaaaacagaaactgcagtattctacagacaaatccaaa
gcaaacgatgctttttctgcttctggaattgaaaaagacatattcgaagcaccatcgttt
tctgctgcatctcagcctcgtgacattcaaggcataacctcaaatggcttaggttcgttg
aaggctgtcacagaaatccctgcaaaatttagaagtgtattcaaagaattcccttacttc
aactatatacagtccaaagcctttgatgatcttctttacacagatcggaattttgtgatt
tgtgcccccactggttctgggaaaactgtggtgtttgagctagcaataacaagattgtta
atggaagcaccattgccgtggctgaacatgaaagttgtttacatggcaccaataaaagcc
ctttgtagtcagcggtttgatgactggaaagaaaaatttggaccgataggcttgacctgt
aaagaacttactggagatacagtaatggatgacctgtttgagattcagcatgccaatata
attatgacaactccagagaagtgggacagtatgactaggaagtggagagacaactccttc
atccaactggttcgcctgtttctcattgatgaggtgcatgttattaaagatgaaaaccgt
ggtccaactcttgaggttgtagtaagcagaatgaaaactgtccagtctttatctaagacc
ttagaaaacgccagccctgctccagtgaggtttgtagctgtatcagcaacaattcccaat
gctgaggatatcgcagaatggctttcagatggggagagacctgctgtgtgtctgaaaatg
gatgagagccacagacctgtgaaacttcagaaagtggtcctgggtttccccagtagtagt
aaccaaactgaattcaagtttgatttagccctcaactataaagtgtacagtgttatacga
acgtactccgatcagaagcccacactcgtgttttgtgcaacgaggaaaggtgtgcagcag
gctgcttctgttcttgtgaaggacgctaagtttatcatcaccgtggagcagaaactacgg
ttgcagaagtctgcatattctataagggattcaaagctaaaagataccttggtgtacggt
gttggttaccatcatgctggaatggagctgtcagatagaaaattggttgaagagttgttt
acttctggagatctaccagttctttttactacaagtactctagctatgggagtgaacttg
ccggctcacctggtcgttataaagtccaccatgcactacactggaggtgcctttgaagag
tacagcgagacagacatcctgcagatgattggaagagctggcaggccccagtttgacacc
acagctactgcagttattatgacccgactaagtacaagagagaagtacgttcagatgcta
gcttgtaatgacactgtggaaagcagtttgcacagacatcttattgagcacctgaacgca
gagatagtgctgcacaccatcacagatgtgagcatcgccctggactggatccggtccaca
ctgctgtatatcagagctctgaaaaacccatctcactatggttttatatctggattgaac
aaagatggaattgaagcaaaattacaagagttatgtttgaagaatctgaaagatttatca
tcgctagacctaataaagatggatgaagaccttaatttcagatcaacagaggcaggaaga
ctaatggcatggtattatattacatttgagacagtgaagaaattttgtgcaatcagtgga
aaagaaactttatcagatttgatttcaatgatatccagctgcagtgagtttctagatgtg
cagctgaggataagcgaaaagagaacactgaacacactaaacaaagacccaaaccggata
accatcagatttccaatggaggggagaattaaaaccagagagatgaaagtaaactgtctt
attcaggctcagctaggatgcatccctatacaagattttgctttgacacaagatacctcg
aagattttcagaaatggctcacgaattgcaaaatggttgtcagattttgtgactgctcag
gaacagaagtttgctgtgcttttaaacagtgtgattttagctaaatgttttaagtgtaaa
ctctgggaaaactctcaacatgtttcaaaacagctggataaaattggcatatcattgtca
aataccatggtaaatgcaggcttgacgtcttttaaaaaaatagaagaagcaaatgcgaga
gaacttgaactgattttaaatagacacccgccattcgggacccagataaaggaagctgtg
atgtatctgccaaagtatgaacttgaggcagagcagattgcaagatatagtgataccaag
gcagaaatactggtgaccattatattaagaaactttgagcagctgcagaccaaaagaaca
gcgccagactttcactatgccaccttaatcataggtgatgcagataaccaagtcgtttgt
aagcacaaaattatggattctgtcttgttaaaaagtggaaattgggttaaaaaaattgat
gtgaagagagctcttatatcagaagatctcagcataaatctaattagctctgattatgtt
ggtcttgatattcaccagaaatttacagtcttttatttaggacccaggaagtttgtaaat
caaacagttacggaaagaagctcaggaacaggtctttctcattccgaatgctcagacaga
gctactgcagcaggatccagtaaaagaacggctacctgcagaaaccctgggaaccgagaa
tgccatcatcactgtaaaaataagcacatatgtgggcatgactgctgtaaaattggagtt
gcacaaaagccagaagctaaagtgtcagcagtgtcctcatatctgtctgacctaaaaagc
agagatgctgtttcttcttttcccccagctaagcgactcaagatacagatgaacaaatct
caaaatgtggaccttaaagaatttggttttgttccaaggccttccctttccagtatagca
aggtcagaatatttaaacatccataaattgccaatattagaacagaggactcagcatgag
atctatggcgaagttgaagagggagcgtctgaatgccgagacgaagactttcccggatgg
gactattgtgcagcttcaaacaaaaggaccccagtgatgctcagcagacatgctaacaca
cctggaaaccacggtgtcgcagttgcagagaagagcaagtcttcagacggcccacatgtg
aactcagagctgggagatgaagtttgggatgactttgatgatgaaagcttaatagaagtt
atgagcttttcagctgacgccgaggagatggctgtgtcagggtttggagacactcgtgat
tcaagtctaggcagaagtaagctacacttcggaagatcaagcagcaggttccaaagagac
atctcaaacagttttgtttcatcacccgagaagccagatgtttgtttgtcagattgttcc
gtgtctaatttcgggctgtcctctgtggcagagttccctcaacaagctggaaatgcaagt
cttgtcaatttacaagagagaaaacagctgaccctctcaccagtgattgagaggatgtgc
tttacccactctgagaaaataccacagtctcccagttttaaggaagtggatatttttatt
ggaaacagtgactctaaaaaggaaattgatcttagtaagtattatcctgatgatgcagcc
gaggaaatgaaggcccttctgggaatatttaatggcattttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (8)   
   RefSeq(nuc) (8)   
Protein domain (5)   
   Pfam (5)   
All databases (32)   

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