KEGG   Rattus norvegicus (rat): 690374
Entry
690374            CDS       T01003                                 
Symbol
Trim47
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM47
  KO
K12023  tripartite motif-containing protein 47
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    690374 (Trim47)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    690374 (Trim47)
SSDB
Motif
Pfam: zf-RING_UBOX zf-C3HC4_4 zf-B_box zf-C3HC4 zf-C3HC4_3 zf-RING_2 PRY zf-RING_5 zf-C3HC4_2 SPRY UBZ_FAAP20 FYVE_CARP1-2 zf-RING_11
Other DBs
NCBI-GeneID: 690374
NCBI-ProteinID: NP_001103055
RGD: 1597317
Ensembl: ENSRNOG00000008215
UniProt: A6HKU0 D3ZA22
Position
10:complement(101836465..101840936)
AA seq 642 aa
MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGGTGGSGGPARCPLCQEP
FPDGLQLRKNHTLSELLQLRQGSSPGPMSAPAPGSARGATPEPSAPSAPPPAPEPSAPCA
PEPWPAGEEPVRCDACPEGAALPAALSCLSCLASFCSAHLAPHERSPALRGHRLVPPLRR
LEESLCPRHLRPLERYCRVERVCLCEACATQEHRGHELVPLEQERALQEVEQSKVLSAVE
DRMDELGAGIAQSRRTVALIKSAAVAERERVSQMFAEATASLQSFQTEVLGFIEEGEAAM
LGRSQGDLRRQEEQRSRLSRARHNLSQVPEADSVSFLQELLALRLALEEGCGPGPGPPRE
LSFTKSSQAVRAVRDILVSACASQWEQLRGLGSGEDELQKLGSEADVESQDPDSTNLLES
EAPRDYFLKFAYIVDLDSDTADKFLQLFGTKGVKRVLCPINYPESPTRFTHCEQVLGEGA
LDRGTYYWEVEIIEGWVSVGVMAEGFSPQEPYDRGRLGRNAHSCCLQWNGRGYSVWFCGL
EAPLPHAFSPTVGVCLEYADHALAFYAVREGKLSLLRRLKASRPRRSGALASPTDPFQSR
LDSHFSGLFNYRLKPAFFLESVDAHLQIGPLKKSCISVLKRR
NT seq 1929 nt   +upstreamnt  +downstreamnt
atggacggcagcgggcctttcagctgccccatctgcctggaaccgctccgggagccggtg
acactaccctgcggccacaacttctgtctcgcttgcctgggcgcgctctggccgcaccgg
agcgcgggcggcaccggtggttccggaggtccggctcgctgcccactttgccaggagcct
tttcccgacggcctgcagctccgcaagaaccacacgctgtccgagttgctgcagctccgc
cagggctcgagccccggacccatgtccgccccggctccaggctcggcccggggcgcgacg
cccgagccctccgcacccagcgcaccacctccggctccggagccctccgctccctgcgcg
cccgagccgtggcccgcgggtgaggagccggtgcgctgcgacgcgtgccccgagggcgcc
gccctgcccgccgcgctctcctgcctctcctgcctcgcctccttctgctccgcgcacctg
gccccgcacgaacgcagccccgccctgcgcggccaccgcctggtgcccccgctgcgccgg
ctggaggagagcctgtgcccgcgccacctgcggccgctggagcgctactgccgcgtggag
cgtgtgtgcctttgcgaggcctgcgccactcaggagcatcggggccacgagctcgtgccg
ctggagcaggagcgcgcgcttcaggaggttgaacagtccaaagtcctgagcgctgtggag
gaccgcatggatgagctgggtgccggcattgcacaatcccgccgtactgtggccctcatc
aagagtgcagctgtggcagagcgggagagggtgagccagatgtttgccgaggccacagcc
tccctacagagtttccagactgaggtgctggggttcatcgaggagggggaggccgccatg
ttgggccgctctcaaggtgacctgcgcagacaagaggaacagcgcagccgcctaagccgg
gctcgccacaacctcagtcaggttccagaggcggattcagtcagctttctccaggagctc
ctggcactgcggctggccctggaggaggggtgtggccctgggcctggaccccccagggaa
ctcagcttcaccaagtcctcccaagcggtccgagccgtgagggacatccttgtctcagcc
tgtgccagccagtgggagcagctgcgggggctgggcagtggtgaggatgagctacagaaa
cttggctcagaagctgatgtggagtcccaggaccctgacagcaccaacctgctggagagc
gaggctcccagggattatttcctcaagtttgcttacattgtggacttggacagcgacacc
gcggacaagttcctgcagctttttggaactaaaggtgtcaagagagtactgtgtcccatc
aactacccggagtcacccacccgattcacacactgcgaacaggtgctaggagaaggtgcc
ctggaccggggcacctactactgggaggtggagatcatcgaaggatgggtcagtgtgggt
gtcatggccgagggcttctccccgcaagagccctatgaccggggccggctgggccgaaac
gcacactcatgctgtctgcagtggaatgggcgtgggtactcagtctggttctgcgggctg
gaagccccactaccccatgccttttcgcctacggttggggtctgcctggagtacgctgac
catgccctggccttctacgctgttcgagaggggaagctgagccttcttcggaggctcaaa
gcctcccggcctcgccgcagcggtgccctggcctcccccactgaccctttccagagtcgc
ctggacagccatttttcagggctcttcaactacaggctcaagcctgccttcttcctggag
agtgtggatgcccacctgcagattggacccctcaagaaatcgtgcatatctgtgctaaag
aggaggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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