KEGG   Rattus norvegicus (rat): 79212
Entry
79212             CDS       T01003                                 
Symbol
Slc6a1
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
  KO
K05034  solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04721  Synaptic vesicle cycle
rno04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    79212 (Slc6a1)
   04721 Synaptic vesicle cycle
    79212 (Slc6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    79212 (Slc6a1)
Transporters [BR:rno02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   79212 (Slc6a1)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 79212
NCBI-ProteinID: NP_077347
RGD: 620533
Ensembl: ENSRNOG00000006527
UniProt: P23978 A6IBU6
Structure
Position
4:149004447..149037840
AA seq 599 aa
MATDNSKVADGQISTEVSEAPVASDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGY
AIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAP
MFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSLV
NTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVV
YFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGL
GSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASG
PGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRR
ELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRF
YDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKWGQGVGWLM
ALSSMVLIPGYMAYMFLTLKGSLKQRLQVMIQPSEDIVRPENGPEQPQAGSSASKEAYI
NT seq 1800 nt   +upstreamnt  +downstreamnt
atggcgactgacaacagcaaggtggctgatgggcagatctctaccgaggtcagcgaggct
cctgtggccagtgacaagcccaaaacccttgtagtcaaggtgcagaagaaggctggagac
ctccctgaccgggacacatggaagggacgcttcgacttcctcatgtcctgtgtgggctac
gccatcggcctgggcaatgtatggaggttcccttatctctgcggaaagaacggtggtggg
gccttcctaattccatatttcctgacgctcatctttgcgggtgttcctctcttccttttg
gagtgctccctaggccagtacacctccattgggggcctgggcgtatggaagctggctccc
atgttcaagggtgtgggcctcgcggcagctgtgctgtccttctggctgaacatttattac
attgtcatcatctcctgggccatctactacctgtacaactccttcaccacgactctgccg
tggaaacagtgtgacaacccctggaacactgaccgctgcttctccaactatagcctggtc
aacaccaccaacatgaccagtgccgtggtggaattctgggagcgcaacatgcaccaaatg
acagatgggctagacaagccaggacagatccgctggccgctagccatcacactggccatt
gcctgggtgcttgtgtatttctgcatctggaagggtgttggatggactggaaaggtggtc
tacttctcagccacatacccctacatcatgctcatcatcctgttcttccgtggagtgaca
cttcctggggccaaggaggggatcctcttctacatcacgcccaacttccgaaagctgtct
gattctgaggtgtggcttgacgccgccacccagatcttcttctcctacggactgggcctg
gggtccctgattgctctgggaagctacaactctttccacaacaatgtgtacagggactcc
atcattgtttgctgcatcaactcctgcaccagcatgtttgccggcttcgtcatcttctcc
atcgtgggcttcatggctcatgtcaccaagaggtccatagccgatgtggcggcctcaggc
cctggactggcattcttggcgtaccccgaggctgtgacacagctacccatctctcccctc
tgggctatcctcttcttctccatgctgctgatgctgggcattgacagccagttctgtacc
gtggagggcttcatcactgccctggtggatgagtaccccaggcttctccgcaatcgccgt
gaactcttcattgctgccgtgtgcatcgtgtcctacctgattggcctctctaacatcacc
cagggtggcatttatgtcttcaaactgttcgattattactctgccagtggcatgagcctg
ctgttcctggttttctttgagtgtgtctccatttcctggttttatggtgtcaaccggttc
tatgacaacatccaggagatggttggctccaggccctgcatctggtggaagctgtgctgg
tcctttttcacacccatcattgtggcgggcgtgtttctcttcagtgctgtgcagatgaca
ccactcaccatgggaagctacgttttccccaagtggggccagggcgtgggctggctcatg
gctctgtcctccatggtgctcatccccgggtacatggcttacatgttcctcaccctaaag
ggctctctgaagcagcgtctccaggtcatgattcagcccagtgaagatatcgtgcgccct
gagaatggtcctgagcagccgcaggctggcagctcagccagcaaggaggcctacatctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (24)   

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