KEGG   Rattus norvegicus (rat): 79213
Entry
79213             CDS       T01003                                 
Symbol
Slc6a11
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3
  KO
K05044  solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04721  Synaptic vesicle cycle
rno04727  GABAergic synapse
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09156 Nervous system
   04727 GABAergic synapse
    79213 (Slc6a11)
   04721 Synaptic vesicle cycle
    79213 (Slc6a11)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    79213 (Slc6a11)
Transporters [BR:rno02000]
 Solute carrier family (SLC)
  SLC6: Sodium- and chloride-dependent neurotransmitter transporter
   79213 (Slc6a11)
SSDB
Motif
Pfam: SNF
Other DBs
NCBI-GeneID: 79213
NCBI-ProteinID: NP_077348
RGD: 628737
Ensembl: ENSRNOG00000005697
UniProt: P31647 A6IBU5
Position
4:148853557..148968895
AA seq 627 aa
MTAEQALPLGNGKAAEEARGSEALGGGGGGAAGTREARDKAVHERGHWNNKVEFVLSVAG
EIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETALGQFTSEGGITCWRRV
CPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLSNCFTTELPWATCGHEWNTEKCVEFQK
LNFSNYSHVSLQNATSPVMEFWERRVLAISDGIEHIGNLRWELALCLLAAWTICYFCIWK
GTKSTGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFYLYPDLSRLSDPQVWVDAGTQ
IFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGV
PIAEVAESGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVDM
YPKVFRRGYRRELLILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECV
CIGWVYGSNRFYDNIEDMIGYRPLSLIKWCWKVVTPGICAGIFIFFLVKYKPLKYNNVYT
YPAWGYGIGWLMALSSMLCIPLWIFIKLWKTEGTLPEKLQKLTVPSADLKMRGKLGASPR
MVTVNDCEAKVKGDGTISAITEKETHF
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgactgcggagcaagcgctgcccctgggcaacgggaaggcggccgaggaggcgcgaggg
tccgaggcgctgggcggcggcggcgggggcgcggcggggacgcgcgaggcgcgcgacaag
gcggtccacgagcgcggtcactggaacaacaaggtggagttcgtgttgagcgtagcggga
gagatcatcggtctgggcaacgtgtggcgcttcccctacctgtgctacaagaacggcgga
ggggcattcctgattccttacgtggtgtttttcatctgctgtggaatccccgtcttcttc
ctggaaacggctctggggcagttcacgagcgagggcggcatcacgtgctggaggagagtc
tgtcctttatttgaaggcatcggctatgcaacacaggtgatcgaggcgcatctcaatgtc
tactacatcatcatcctggcgtgggccatcttctacttaagcaactgcttcaccaccgag
ctcccctgggccacctgtgggcatgagtggaacacagagaaatgtgtggagttccagaag
ctgaacttcagcaactacagtcatgtgtccctgcagaacgcaacctccccggtcatggag
ttctgggaacgccgggtcttggctatatctgatggcattgaacacatcgggaacctccga
tgggagctggcactgtgtctcctggcggcttggaccatctgctacttctgcatctggaag
ggtacgaagtcaactggaaaggtcgtgtatgtcactgcaaccttcccctacatcatgctg
ctgatcctcctgatccgaggggtcacgttgccgggtgcctcggaaggcatcaagttctac
ctgtaccctgacctctcccggctctctgatccacaggtgtgggtggatgctgggacgcag
atctttttctcctatgccatctgcctgggctgcctgaccgctctggggagttacaacaac
tataacaacaactgctacagggactgtattatgctctgctgtctgaacagtggcaccagc
ttcgtggctgggtttgctatcttctcagtcctgggcttcatggcgtacgagcagggcgtg
cctattgctgaggtggcagaatcaggtcctggactggctttcatcgcctaccccaaggct
gtcactatgatgcccctgtccccattgtgggccaccctgttcttcatgatgctcatcttc
ctgggcctggacagtcagtttgtgtgtgtggagagccttgtgacagccgtggttgacatg
taccccaaggtcttccggcggggctaccggcgagaactgctcatcctggccctgtccatt
gtctcttatttcctaggcctggtgatgctgacagagggaggcatgtacattttccagctt
tttgactcatacgccgccagtggcatgtgcttgctcttcgtggccatctttgagtgtgtc
tgcatcggctgggtgtatggaagtaacaggttctatgacaatattgaggacatgattgga
taccggccactgtcactcatcaagtggtgctggaaagttgtgacccctgggatctgtgcg
ggcatcttcatcttctttctggtcaagtacaagccgctcaagtacaacaatgtgtacaca
tatcctgcttggggctacggcattggctggctcatggctctgtcctccatgctgtgcatc
ccgctctggatcttcatcaagctgtggaagacagagggcaccctgcccgagaaattacag
aagttgacagtccccagcgctgatctgaaaatgaggggcaagcttggggccagcccacgg
atggtgaccgttaatgactgtgaggccaaggtcaaaggcgacggtaccatctctgccatc
acagagaaggagacgcacttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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