KEGG   Rattus norvegicus (rat): 79227
Entry
79227             CDS       T01003                                 
Symbol
Thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    79227 (Thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    79227 (Thoc6)
   03041 Spliceosome [BR:rno03041]
    79227 (Thoc6)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     79227 (Thoc6)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    79227 (Thoc6)
SSDB
Motif
Pfam: WD40 NBCH_WD40 WDR54
Other DBs
NCBI-GeneID: 79227
NCBI-ProteinID: NP_077360
RGD: 708553
Ensembl: ENSRNOG00000003497
UniProt: Q6AY87
Position
10:complement(13204643..13210004)
AA seq 341 aa
MEHATPLAVPLGQAEVFQALQRLHMTIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALSSE
AKEESKKPMVTFHAHDGPVYSMVSTDRHLLSAGDGEVKGWLWAEILKKGCKELWRRQPPY
RTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRERS
PEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDSDWMVCGGGPA
LTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSSPGL
LSLSLNQQPAAPECKVLTASGNSCRVDVFTNLGYRAFSLSF
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggaacatgccacaccgctcgcggtgcctctgggtcaggctgaggtatttcaggccttg
cagcggctgcacatgaccatcttttcccagagtgtctcgccctgtgggaagttcctggca
gctggcaacaattatgggcagattgccatcttcagtttgtctgctgccttaagttcagaa
gccaaagaagaaagcaaaaagcctatggtgaccttccacgcccatgacggacctgtctac
agcatggtctccacggaccgacatctactcagtgctggggacggagaggtcaagggctgg
ctttgggcagaaatactgaagaagggctgtaaggaactgtggcgtcgccagcctccatac
aggaccagcctggaagttcctgaaatcaacgccttgctgcttgtccccaaggagaattca
cttatcctagctgggggagattgtcagctgcacaccatggatctggaaactgggaccttc
acacgggccctccggggccacacagactacatccattgcctggcactgagggaacgcagc
cctgaggtattgtccggtggcgaggatggagctgtacggctttgggatctccgtatagcc
aaagaggtccagaccatcgaagtctacaagcatgaggagtgctcaaggccccacaatggg
cgctggattggatgcttggcaactgactcagactggatggtctgtggagggggcccagcc
ctcaccctctggcacctcaggtcttccacacccactacggtctttcccattcgagcacca
cagaaacatgtcaccttctaccaggacctgatcctgtctgctggccagggctgttgtgtc
aatcactggcaactgagtggggagcttaaggcccaggtgcctggctcctccccaggactg
ctcagcctgagcctcaaccagcagccagcagccccagagtgtaaggtcctgactgcatca
ggcaacagctgtcgagtagacgtctttaccaacctgggctaccgagccttctccctgtcc
ttctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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