KEGG   Rattus norvegicus (rat): 83726
Entry
83726             CDS       T01003                                 
Symbol
Ctcf
Name
(RefSeq) transcriptional repressor CTCF
  KO
K23195  transcriptional repressor CTCF
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    83726 (Ctcf)
   03036 Chromosome and associated proteins [BR:rno03036]
    83726 (Ctcf)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    83726 (Ctcf)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   Other chromatin remodeling factors
    83726 (Ctcf)
SSDB
Motif
Pfam: zf-H2C2_2 zf-C2H2 zf-C2H2_4 zf-H2C2_5 zf-C2H2_jaz zf-met zf-C2HE zf-C2H2_6
Other DBs
NCBI-GeneID: 83726
NCBI-ProteinID: NP_114012
RGD: 621344
Ensembl: ENSRNOG00000017674
UniProt: Q9R1D1
Position
19:50431478..50481013
AA seq 737 aa
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSENAEPDLDDNEEEEEPAVEIEPEPEPQPQPQPQPQPQPVAPAPPPAKK
RRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQAAPAD
APNGDLTPEMILSMMDR
NT seq 2214 nt   +upstreamnt  +downstreamnt
atggaaggtgaggcggttgaagccattgtggaagagtctgaaactttcattaaaggaaag
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccaccta
ccccagaaccagacagacgggggtgaggtggtccaggatgtcaacagtagcgtacagatg
gtaatgatggaacagctggaccctacccttctccaaatgaagactgaagtaatggagggg
acagtggctcctgaagcagaagctgcagtggacgatacccaaatcataaccctgcaggtt
gtaaacatggaggaacagcccattaatataggagaacttcagcttgtccaagtacctgtt
cctgtgactgtacctgttgctactacgtcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttgcagaaagtgaaccgatgatatgtcacaccttaccttta
cctgaaggatttcaggtggtaaaagtgggggccaatggagaagtggagacactagagcag
ggggagcttcctcctcaggaagaccctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagtaaacttcgttacacagaggagggcaaagac
gtggatgtgtctgtgtatgattttgaggaagaacagcaggaaggactgctgtctgaggtt
aatgcagagaaagtggttggtaatatgaagcctccgaagccaacaaaaattaaaaaaaaa
ggtgtaaagaaaacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagagaccacacaagtgccatctctgtggc
agagcattcagaacagtaaccctcctgaggaatcatcttaacacacacacaggtactcgt
cctcacaagtgccccgactgcgacatggcttttgtgaccagtggagagttggtgcggcat
cgtcgttataaacacactcatgagaaaccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgacacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcatatgagaacc
cattcaggtgaaaaaccttatgaatgttatatttgtcatgctcggtttacccagagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cactgtgacactgtcatagcccgaaaaagtgatttgggtgtccacttgagaaagcagcat
tcctatattgagcagggcaaaaaatgtcgctactgtgatgctgtgtttcatgagagatat
gctcttatccagcatcaaaaatcacacaaaaatgagaagcgcttcaagtgcgaccagtgt
gattatgcttgtagacaggagaggcacatgatcatgcacaagcgcactcacacgggggag
aagccttatgcctgcagccactgcgacaagaccttccgccagaaacagctccttgacatg
catttcaagcgctatcatgatcccaactttgtccccgctgcctttgtctgttctaagtgt
gggaaaacattcacacgccggaacacaatggcgagacacgcagataactgtgctggtcca
gacggtgtagaaggggaaaatggaggagagacaaagaagagcaaacgaggaagaaaaaga
aagatgcggtctaaaaaagaagactcctctgacagtgaaaatgctgagccggatctcgat
gacaatgaggaggaggaggagcctgctgtagaaattgaacctgagccagagccgcagccg
cagcctcagccacagccgcagccgcagcctgtggccccagccccaccacctgccaagaag
agaagagggcgacctcctggaagaaccaaccaacccaaacagaaccagccaacagccatc
atccaggttgaagaccagaatacaggtgcaattgagaacattatagttgaagtcaaaaaa
gagccagatgccgagcctgcggagggggaagaggaggaggctcaggcagcacccgcagac
gcccccaacggagacctcacgcctgagatgattctcagcatgatggaccggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (5)   
DNA sequence (11)   
   RefSeq(nuc) (5)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (62)   

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