KEGG   Rattus norvegicus (rat): 83806
Entry
83806             CDS       T01003                                 
Symbol
Psmd1
Name
(RefSeq) 26S proteasome non-ATPase regulatory subunit 1
  KO
K03032  26S proteasome regulatory subunit N2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03050  Proteasome
rno05010  Alzheimer disease
rno05012  Parkinson disease
rno05014  Amyotrophic lateral sclerosis
rno05016  Huntington disease
rno05017  Spinocerebellar ataxia
rno05020  Prion disease
rno05022  Pathways of neurodegeneration - multiple diseases
rno05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    83806 (Psmd1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    83806 (Psmd1)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    83806 (Psmd1)
   05012 Parkinson disease
    83806 (Psmd1)
   05014 Amyotrophic lateral sclerosis
    83806 (Psmd1)
   05016 Huntington disease
    83806 (Psmd1)
   05017 Spinocerebellar ataxia
    83806 (Psmd1)
   05020 Prion disease
    83806 (Psmd1)
   05022 Pathways of neurodegeneration - multiple diseases
    83806 (Psmd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:rno03051]
    83806 (Psmd1)
Proteasome [BR:rno03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    non-ATPase subunits
     83806 (Psmd1)
SSDB
Motif
Pfam: RPN2_N RPN2_C PC_rep HEAT_2 HEAT HEAT_EZ PA26 Tim54
Other DBs
NCBI-GeneID: 83806
NCBI-ProteinID: NP_114184
RGD: 621669
Ensembl: ENSRNOG00000017730
UniProt: O88761
Structure
Position
9:94157971..94233218
AA seq 953 aa
MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGPEKDSDSMETE
EKTAGAVAGKTPDASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGVCC
AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMTETCRY
QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
NT seq 2862 nt   +upstreamnt  +downstreamnt
atgatcacttcagccgctggaattatttctcttctggatgaagaagagccacagctcaag
gaatttgcactacacaaattgaatgcagttgtgaatgacttctgggcagaaatttctgag
tctgtagacaaaatagaagttttatatgaagatgaaggtttccgcagtcggcagtttgca
gccttggtggcatcgaaagtattttatcacctgggggctttcgaggagtctctgaattat
gctcttggagcaggtgacctcttcaatgtcaatgataactctgaatatgtggagactatt
atagcaaaatgcattgatcattataccaaacagtgtgtggaaaatgcagatttgcctgaa
ggagaaaagaagccaattgaccagagattggaaggcatcgtgaataagatgttccagcga
tgtctcgatgatcacaagtataagcaagcgattggcattgctctggagaccaggagacta
gatgtctttgagaagactatactggaatctaatgatgtcccaggaatgctagcttacagc
ctcaagctctgcatgtctttaatgcagaataagcagtttcggaataaagtattgcgagtc
ctggttaaaatctacatgaacttggaaaaacctgatttcatcaatgtttgtcagtgctta
atcttcttagatgacccccaggccgtgagtgatatcttagaaaagctggtaaaggaagac
aacctgctgatggcctatcagatttgctttgatttgtacgaaagtgccagccagcagttt
ttgtcatctgtgatccagaatcttcgaactgttgggacccctattgcttctgtgcctgga
tctaccaatacgggtactgtgccaggaccagagaaagacagtgactctatggagaccgag
gagaagacagccggtgcagtggcagggaaaacaccagacgctagtccagagcccaaggac
cagacattgaaaatgattaaaattttaagtggtgaaatggctatcgagttacacctgcag
ttcctaatacgcaataataacacagacctcatgattctgaaaaacacaaaggatgcagta
cgaaattctgtatgtcatacagcaactgtaatagcaaactcattcatgcactgtgggact
accagtgaccagttccttagagataacttggaatggctggccagagccactaactgggcc
aaatttactgcaactgccagcttgggtgtaatccataagggccatgagaaggaagcacta
cagttaatggcaacatacctccctaaggacacttctccaggatcagcctatcaggaaggt
ggaggtctctatgcattgggtctcattcatgccaatcatggtggtgacataattgactat
ctccttaatcagctcaagaatgccagcaatgatatcgttagacatggaggcagcttgggc
cttggtttggctgcaatgggaactgcacgtcaggatgtatatgatttgctgaaaacaaac
ctgtatcaggatgatgctgtgacaggggaggcagctggcctggccttaggtttggttatg
ttaggctctaaaaacgcccaggcgattgaggatatggttggctatgcacaagaaactcaa
cacgagaagattctgcgtggtctagcagttggcattgcgttagtgatgtatgggaggatg
gaggaggccgatgctctcattgaatctctctgtcgtgataaggacccaattcttagaaga
tctggaatgtatactgtagccatggcttattgtggctctggtaacaataaagctattcga
cgcctgctgcatgttgctgtaagtgatgtcaacgatgatgtcagaagagcagcagtagag
tctcttggcttcattttgttcaggacgcctgaacagtgtccaagtgtggtctctttgttg
tccgagagttataaccctcatgtgcgctacggcgctgcaatggccctgggagtctgctgt
gctggtacaggaaacaaggaagcaattaatttactggagccaatgaccaatgaccctgtg
aactacgtgcggcaaggggctctgatagcctcagctctcatcatgatccaacagaccgaa
atcacgtgtccaaaggtaaaccagttccggcagctgtattccaaagtcatcaatgacaag
catgatgatgtcatggccaaatttggcgctattctggcccaaggcatactggatgcaggt
ggtcataatgtcacaatctccttacagtccaggactgggcacactcatatgccttctgtg
gttggcgtccttgtctttacccagttctggttctggtttcccctttcacacttcctatca
ttggcttatactcctacctgtgtcatcggccttaacaaggatttaaagatgccgaaagtt
caatataaatcaaattgtaaaccatccacattcgcataccctgcccctctggaagttcca
aaagaaaaagaaaaggaaaaggtttccaccgctgtgttgtctattactgccaaagctaaa
aaaaaagaaaaagaaaaagaaaaaaaggaggaggagaagatggaagtggacgaagcagaa
aagaaggaagagaaagagaagaaaaaagaaccggaaccaaacttccagctgttggataat
ccagcacgggtcatgcctgcccagctgaaggtcttaagtatgacagagacctgcagatac
caacccttcaagccactctccatcgggggcatcataattctgaaagacaccagcgaagac
attgaggaacttgtggaacccgtggcagcacatggcccaaagattgaagaggaggagcag
gagccagagcccccagagccatttgagtacatcgatgactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (23)   
   RefSeq(nuc) (1)   
   GenBank (11)   
   EMBL (11)   
3D Structure (4)   
   PDB (4)   
Protein domain (8)   
   Pfam (8)   
All databases (56)   

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