KEGG   Rattus norvegicus (rat): 83807
Entry
83807             CDS       T01003                                 
Symbol
Ybx3
Name
(RefSeq) Y-box-binding protein 3
  KO
K06099  cold shock domain protein A
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04530  Tight junction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    83807 (Ybx3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    83807 (Ybx3)
   03041 Spliceosome [BR:rno03041]
    83807 (Ybx3)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Cold-shock domain factors, DbpA-like
    83807 (Ybx3)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    83807 (Ybx3)
SSDB
Motif
Pfam: CSD OB_RNB
Other DBs
NCBI-GeneID: 83807
NCBI-ProteinID: NP_114185
RGD: 621056
UniProt: Q62764
Position
4:complement(166861180..166884532)
AA seq 361 aa
MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPG
PAPASSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
PRNYAGEEEEEGSGSSEGFEPPAADGQFSGARNQLRRPQYRPPYRQRRFPPYHVGQTFDR
RSRVFPHPNRMQAGEIGEMKDGVPEGAQLQVHRNPTYRPRFRRGPARPRPAPAIGEAEDK
ENQQAANGPNQPSARRGFRRPYNYRRRPRPLNAVSQDGKETKAGEAPTENPAPATEQSSA
E
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgagcgaggcgggcgaggccaccaccggcggcaccacgctcccgcaggccgcggccgac
gcgcccgccgcggcgcccccggaccccgcgcctaagagcccggcggccagcggcgcgccc
caggccccggcgcccgccgcgctgctcgcggggagccccggcggagacgcagcccccggg
cccgccccggcctcatcagcccccgcgggaagcgaggacgcggagaagaaagttctcgcc
accaaagtccttggcactgtcaaatggttcaacgtcagaaatggatatggatttataaac
cgaaacgacaccaaagaagatgtgtttgtacaccagactgccatcaagaagaataatcca
cgcaagtatctgcgcagtgtgggggatggagaaactgtagagtttgatgtggttgaagga
gaaaagggtgctgaagcagcaaatgtgactggcccagatggagttcctgtagaagggagt
cgctatgctgctgatcggcgccggtacagacgcggctactatggcaggcgccgaggacct
ccccgtaattacgctggggaggaggaggaggaagggagcggcagcagtgaaggatttgag
ccccctgccgcagatgggcagttctctggggccaggaatcagctgcgccgcccccagtat
cgccctccgtaccggcagcggcgtttcccgccttaccacgtgggacagacctttgaccgt
cgctcacgggtctttccccatcccaacagaatgcaggctggtgagattggagagatgaag
gatggagtccccgagggagcgcagctccaggttcatcggaatcccacttaccgcccaagg
ttccgcaggggacctgctcgcccacgacctgcccctgctattggagaggctgaagataaa
gaaaatcagcaagcggccaatggtccaaaccagccgtctgcccgccgtggattccgacgc
ccctacaactacaggcgccgcccccgtcccctcaacgctgtttcacaagatggcaaagag
accaaggcaggtgaagcaccaactgagaaccccgctccagccaccgaacagagcagtgcc
gagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (12)   
   RefSeq(nuc) (2)   
   GenBank (5)   
   EMBL (5)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

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