KEGG   Rattus norvegicus (rat): 83830
Entry
83830             CDS       T01003                                 
Symbol
Gtf2a1
Name
(RefSeq) transcription initiation factor IIA subunit 1
  KO
K03122  transcription initiation factor TFIIA large subunit
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    83830 (Gtf2a1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    83830 (Gtf2a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    83830 (Gtf2a1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIA
     83830 (Gtf2a1)
SSDB
Motif
Pfam: TFIIA
Other DBs
NCBI-GeneID: 83830
NCBI-ProteinID: NP_071544
RGD: 69246
Ensembl: ENSRNOG00000004300
Vega: OTTRNOG00000000864
UniProt: O08949 A6JEC8
Position
6:complement(116219614..116252220)
AA seq 377 aa
MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDGFH
SEEQQLLLQVQQQHQPQQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIV
PDSKLIQHMNASSITSAAATAATLALPAGVTPVQQILTNSGQLLQVVRAANGAQYIFQPQ
QSVVLQQQVIPQMQPGGVQAPVIQQVLAPLPGGISPQTGVIIQPQQILFTGNKTQVIPTT
VAAPTPAQAQIPAAGQQQPQAQPAQQQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDK
EKDGAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN
LNGRDYIFSKAIGDAEW
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggcgaactcggcaaacacaaacaccgtgcctaaattgtatagatctgtgattgaagat
gttattaatgatgtccgagacatttttctggatgatggagtggatgaacaggtcctgatg
gaactaaaaactttgtgggagaataaactaatgcagtctagggcagtagatggatttcat
tcagaagaacagcagcttttgttgcaagttcagcagcagcaccagccccagcagcagcag
catcaccaccaccaccaccaccagcaggcgcaacctcagcaaacggtacctcagcaagca
cagacccagcaggttcttattcctgcgtcacagcaagctacagcaccacaagttattgtt
cctgattctaagttgatacaacatatgaatgcatcaagtattacgagtgctgctgctaca
gctgctaccttggcgctccctgcaggcgtgactcctgttcagcagatactaacaaattca
ggccagctgcttcaggtagtcagagcagccaatggtgcccaatatatctttcagcctcag
cagtcagttgttctacaacaacaagttataccacaaatgcagcctggtggagtacaagcg
cctgttatccagcaggtcctagccccacttcctggagggatttcaccacagaccggtgtc
atcatccagccacagcaaatcttatttacagggaataagactcaggtcattcctacgaca
gtggcagcgcccacaccagcacaagcacagatccctgcagctggacagcagcagccacag
gcccagcctgctcagcagcaggctccattggtgctgcaagttgacggaacaggggacaca
tcttctgaggaagatgaagacgaagaagaagactatgatgatgatgaagaggaagataaa
gagaaagatggagccgaagatgggcaggtggaagaagagcccctcaacagcgaagatgat
gtaagtgatgaggaagggcaggaactctttgacacagaaaatgttgttgtatgccagtat
gataagatacacagaagtaaaaataaatggaaatttcatctcaaggatggcattatgaat
cttaatggaagagattatatattttccaaagccattggagatgcagagtggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (7)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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