KEGG   Rattus norvegicus (rat): 83833
Entry
83833             CDS       T01003                                 
Symbol
Smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04714  Thermogenesis
rno05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    83833 (Smarcd2)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    83833 (Smarcd2)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    83833 (Smarcd2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    83833 (Smarcd2)
   03036 Chromosome and associated proteins [BR:rno03036]
    83833 (Smarcd2)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     83833 (Smarcd2)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    83833 (Smarcd2)
   PBAF complex
    83833 (Smarcd2)
   GBAF(ncBAF) complex
    83833 (Smarcd2)
SSDB
Motif
Pfam: SWIB
Other DBs
NCBI-GeneID: 83833
NCBI-ProteinID: NP_114189
RGD: 69289
Ensembl: ENSRNOG00000010557
UniProt: O54772 A6HK23
Position
10:complement(91693542..91702408)
AA seq 531 aa
MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPNPALRGPGPSGGMGVPGAAAFR
PMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLL
VPQAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEI
QEAIKKPLTQKRKLRIYISNTFSPSKADGDNSGTAGTPGGTPAADKVASWELRVEGKLLD
DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTL
LLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFR
QIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQM
SNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLK
IITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
NT seq 1596 nt   +upstreamnt  +downstreamnt
atgtcgggccgtggcgcgggcgggttcccgctgcccccgctgagccccggcggcggcgcc
gttgccgcggccctcggtgcgccgcctccgcctgcgggacccggaatgctgcccaacccg
gcgctcaggggcccggggccttctggaggcatgggggtaccgggggccgctgccttccgc
cccatgggccccgcgggccccgcggcgcagtaccagcgacctggcatgtccccaggaagt
aggatgcccatggctggcttgcaggtgggacctccggctggttccccatttggcacagct
gctccacttcgacctggcatgccacctaccatgatggatccattccgaaaacgcctgctt
gtgcctcaggcccagcccccgatgcctgcccagcgccgagggttaaagaggaggaagatg
gcagataaggttctacctcagcgaatccgggagcttgtcccagagtctcaggcatacatg
gatcttttagctttcgagaggaagctggaccagaccatcgctcgcaagcggatggagatc
caagaggccatcaagaagcctctgacgcaaaagcgaaaacttcggatctatatttccaat
acattcagtcccagcaaggcagatggtgataattcaggaactgcagggacccctggggga
accccagcagcagacaaggtggcctcctgggagcttcgagtagagggaaaacttctggat
gatcctagcaaacagaagaggaagttctcctcattctttaagagccttgttatcgagttg
gacaaggagctgtatgggcctgacaaccatctggtggagtggcatcggatgcccaccact
caggaaacagatggctttcaggtgaaacggccaggagatctcaatgtcaagtgcaccctt
ctgctcatgctggatcatcagccacctcagtataaactggacccccgcctggcgaggttg
ctgggagtgcacacacagacgagagctgccatcatgcaggcgctgtggctttacatcaaa
cacaaccagctgcaggatgggcatgagcgggagtacatcaactgcaaccgctacttccgc
cagatcttcagctgtggccggctccgtttctccgagatccccatgaagctggctgggctg
ctgcagcatccagaccccattgttattaaccatgtcattagcgtggaccctaatgaccag
aagaagacagcctgttatgacatcgacgtagaggttgatgaccccctgaaggcccagatg
agtaacttcctggcctctaccaccaaccagcaggagattgcctctcttgatgtcaagatc
catgagaccattgagtccatcaaccagctgaagacccagagggacttcatgctcagcttc
agcaccgagccccaggacttcatccaggaatggctccgctcccaacgccgagacctcaag
atcatcacagatgtgattggaaaccctgaggaggagagacgagctgctttctaccaccag
ccctgggctcaggaagcagttgggaggcacatctttgccaaggtgcagcagcgaaggcag
gaactggaacaggtgctgggaattcgcctgacctaa

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