KEGG   Rattus norvegicus (rat): 84012
Entry
84012             CDS       T01003                                 
Symbol
Slc1a6
Name
(RefSeq) excitatory amino acid transporter 4
  KO
K05617  solute carrier family 1 (high affinity glutamate/aspartate transporter), member 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04721  Synaptic vesicle cycle
rno04724  Glutamatergic synapse
rno05017  Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09156 Nervous system
   04724 Glutamatergic synapse
    84012 (Slc1a6)
   04721 Synaptic vesicle cycle
    84012 (Slc1a6)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05017 Spinocerebellar ataxia
    84012 (Slc1a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    84012 (Slc1a6)
Transporters [BR:rno02000]
 Solute carrier family (SLC)
  SLC1: High-affinity glutamate and neutral amino acid transporter
   84012 (Slc1a6)
SSDB
Motif
Pfam: SDF
Other DBs
NCBI-GeneID: 84012
NCBI-ProteinID: NP_114454
RGD: 620340
Ensembl: ENSRNOG00000007509
UniProt: O35921 Q7TSX6
Position
7:complement(11492422..11521007)
AA seq 561 aa
MSSHGNSLFLRESGAGGGCLQGLQDSLQQRALRTRLRLQTMTREHVRRFLRRNAFILLTV
SAVIIGVSLAFALRPYQLSYRQIKYFSFPGELLMRMLQMLVLPLIVSSLVTGMASLDNKA
TGRMGMRAAVYYMVTTVIAVFIGILMVTIIHPGKGSKEGLHREGRIETVPTADAFMDLVR
NMFPPNLVEACFKQFKTQYSTRVVTRTIVRTDNGSELGASISPPSSAENETSILENVTRA
LGTLQEVISFEETVPVPGSANGINALGLVVFSVAFGLVIGGMKHKGRVLRDFFDSLNEAI
MRLVGIIIWYAPVGILFLIAGKILEMEDMAVLGGQLGMYTLTVIVGLFLHAGGVLPLIYF
LVTHRNPFPFIGGILQALITAMGTSSSSATLPITFRCLEEGLGVDRRITRFVLPVGATVN
MDGTALYEALAAIFIAQVNNYELNLGQITTISITATAASVGAAGIPQAGLVTMVIVLTSV
GLPTEDITLIIAVDWFLDRLRTMTNVLGDSIGAAVIEHLSQRELELQEAELTLPSLGKPY
KSLMAQEKGASRGRGGNESVM
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagcagccacggcaacagtctgttcctgagggagagcggcgctggcgggggctgtctg
caaggcctgcaggacagtctgcagcagagagcactgcgcacgcgcttgcgcctgcagacc
atgacccgagagcacgtgcggcgcttcctgcgccgaaatgccttcatcttgctcacagtc
agcgctgtgatcattggcgtcagcctggcatttgccttgcgcccataccagctctcctac
cgccagatcaagtacttctcttttcctggtgagctgctcatgaggatgctgcagatgctg
gtgctacccctcattgtctccagccttgtcacaggtatggcatccttggacaacaaggca
acagggaggatgggaatgagggcagctgtgtactacatggtgacgaccgtcattgcagtt
ttcatcggcatcctaatggttaccatcatacatcctgggaagggctccaaggaggggctg
caccgtgagggccgaattgagactgttccaacagctgatgctttcatggacctggtcaga
aatatgtttccaccaaaccttgtggaggcctgcttcaaacagtttaaaacacagtacagc
acacgagtggtaacaaggacgattgtaaggacagacaacgggtcagagttgggggcctcc
atttctcctccatcctcagcagaaaatgaaaccagcatcctggaaaatgtcacccgggcc
ttgggcaccctgcaggaggtgataagctttgaggagactgtgcctgtacctggctcagct
aatggcatcaacgctttgggcctcgtggtcttctctgtggccttcgggctggtcatcggt
ggcatgaagcacaaaggccgtgtcctgagggatttcttcgacagcctcaatgaggctatt
atgaggctggtgggcatcatcatctggtatgcaccagtgggcatcctgttcctgattgct
ggaaagattctggaaatggaagacatggctgtccttggaggtcagctgggcatgtacacg
ctgactgtcattgtcggcttatttcttcatgctggtggtgtgttacccctcatctacttc
cttgtcacacatcggaacccctttcccttcatcggtggtatactacaggcactcatcaca
gccatgggtacctcttccagctctgcaactctgcctatcactttccgatgcctggaggag
ggcctgggtgtggaccgccgcatcaccagattcgtgttgcctgtgggggccactgtcaac
atggacggcaccgcgctctatgaggccttggcagccatctttattgctcaagtcaacaac
tatgagctgaaccttggtcagatcaccacaatcagcatcacagccacagctgccagcgta
ggagcagctggcatcccccaggcaggactggttaccatggtgattgtgctcacatccgtc
ggcctgcccacagaggacatcacattgatcatagctgtggattggttccttgatcgactt
cgtacgatgaccaatgtacttggggactcaattggagcagctgtcattgagcatttgtcc
caacgggagctggagctgcaagaggctgagctgactctacccagcctggggaaaccctat
aagtcactcatggcacaagaaaagggggcatcaaggggtcggggaggtaatgagagtgtc
atgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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