KEGG   Rattus norvegicus (rat): 84352
Entry
84352             CDS       T01003                                 
Symbol
Col1a2
Name
(RefSeq) collagen alpha-2(I) chain precursor
  KO
K06236  collagen type I alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04151  PI3K-Akt signaling pathway
rno04510  Focal adhesion
rno04512  ECM-receptor interaction
rno04611  Platelet activation
rno04926  Relaxin signaling pathway
rno04933  AGE-RAGE signaling pathway in diabetic complications
rno04974  Protein digestion and absorption
rno05146  Amoebiasis
rno05165  Human papillomavirus infection
rno05205  Proteoglycans in cancer
rno05415  Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    84352 (Col1a2)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    84352 (Col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    84352 (Col1a2)
 09150 Organismal Systems
  09151 Immune system
   04611 Platelet activation
    84352 (Col1a2)
  09152 Endocrine system
   04926 Relaxin signaling pathway
    84352 (Col1a2)
  09154 Digestive system
   04974 Protein digestion and absorption
    84352 (Col1a2)
 09160 Human Diseases
  09161 Cancer: overview
   05205 Proteoglycans in cancer
    84352 (Col1a2)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    84352 (Col1a2)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    84352 (Col1a2)
  09166 Cardiovascular disease
   05415 Diabetic cardiomyopathy
    84352 (Col1a2)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    84352 (Col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    84352 (Col1a2)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   84352 (Col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 84352
NCBI-ProteinID: NP_445808
RGD: 621351
Ensembl: ENSRNOG00000011292
UniProt: P02466
Structure
Position
4:32563938..32598868
AA seq 1372 aa
MLSFVDTRTLLLLAVTSCLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPRGRDGVDGPVG
PPGPPGAPGPPGPPGPPGLTGNFAAQYSDKGVSAGPGPMGLMGPRGPPGAVGAPGPQGFQ
GPAGEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLP
GFKGIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGAR
GSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEAGLPGLSGPV
GPPGNPGANGLTGAKGATGLPGVAGAPGLPGPRGIPGPVGAAGATGPRGLVGEPGPAGSK
GETGNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRA
GVMGPPGNRGSTGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNVGPAGKEGPVGLPGID
GRPGPIGPAGPRGEAGNIGFPGPKGPSGDPGKPGEKGHPGLAGARGAPGPDGNNGAQGPP
GPQGVQGGKGEQGPAGPPGFQGLPGPSGTAGEVGKPGERGLPGEFGLPGPAGPRGERGPP
GESGAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGK
GEKGETGLRGEIGNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGPRGSPGER
GEVGPAGPNGFAGPAGSAGQPGAKGEKGTKGPKGENGIVGPTGPVGAAGPSGPNGPPGPA
GSRGDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGIRGPRGDQGPVGRTGEI
GASGPPGFAGEKGPSGEPGTTGPPGTAGPQGLLGAPGILGLPGSRGERGLPGIAGALGEP
GPLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNI
GPTGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDK
GARGLPGLKGHNGLQGLPGLAGLHGDQGAPGPVGPAGPRGPAGPSGPIGKDGRSGHPGPV
GPAGVRGSQGSQGPAGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYE
VDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWKSDYYWIDPNQGCTMDAIKVY
CDFSTGETCIQAQPVNTPAKNAYSRAQANKHVWLGETINGGSQFEYNAEGVSSKEMATQL
AFMRLLANRASQNITYHCKNSIAYLDEETGRLNKAVILQGSNDVELVAEGNSRFTYTVLV
DGCSKKTNEWDKTIIEYKTNKPSRLPFLDIAPLDIGGTNQEFRVEVGPVCFK
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatacgcgaactctgttgctgcttgcagtaacgtcgtgcctagca
acatgccaatctttacaaatgggatctgtacggaagggccccactggagacagaggaccg
cgtggacaaaggggcccagcaggtccccgaggcagagatggtgttgatggtcccgttggc
cctcctggtccccctggtgcccctggcccccctggtccccctggcccccctggtcttact
gggaactttgctgctcagtattctgacaaaggagtttcagctggccccggaccaatgggc
ttaatgggacccagaggccctcctggtgctgtcggagcccctggccctcaaggtttccaa
ggacctgctggtgagcctggtgagcccggacaaacgggtcctgcaggttcccgtgggcca
gctggccctcctggcaaggccggtgaagatggtcaccctggaaaacctggaagacctggc
gagagaggagtcgttgggccacagggtgctcgtggtttccctgggactcctggacttcct
ggcttcaaaggcattcgaggacacaacggtctggatggattgaaaggacagcctggtgcc
cagggtgtgaagggtgaacccggtgcccctggagagaatggaaccccaggtcaagcagga
gcccgagggcttcctggtgagagagggcgtgtcggagctcctggtccagctggtgcccgt
ggcagtgatggcagtgttggccccgtcggccctgctggtcccattgggtctgctggtcct
cctggtttcccaggtgctcctggtcccaagggtgaacttgggcctgttggtaaccctggc
cctgctggtcctgctggtccccgtggtgaagcgggtcttccgggtctttctggccccgtt
ggacctcctggcaaccctggagcaaatggcctcactggtgccaagggagccactggactc
cctggtgttgctggggctcctggtctccccggtccccgtggtattcctggccccgttggt
gctgctggtgctactggtcccagaggacttgttggtgaacctggtcctgctggctccaaa
ggagagactggtaacaagggtgagcctggctctgctggagcccaaggtcctcctggtccc
agcggtgaagaaggaaagagagggtcccctggagaacctggatctgctggtcctgcaggg
cctccagggctgagaggcagccctggttctcgaggtcttcctggagctgatggcagagct
ggtgtgatgggccctcctggcaatcgtggttcaactggccctgctggagtccgaggtcct
aatggagatgccggtcgccctggagaacctggtctcatgggacccagaggtcttcccggg
tctcctggaaatgttggcccagctggtaaagaaggccctgtgggtctccctggcatcgat
ggcagacctggcccaattggcccagctggaccaagaggtgaagctggcaacatcggattc
cctggacccaaaggcccctctggtgatcctggcaaacctggtgagaaaggccatcccggt
ctcgctggtgctcggggagctccaggtcccgacggcaacaatggtgctcagggccctcct
ggacctcagggtgttcaaggtggcaaaggtgaacagggccctgctggtcctccaggcttc
cagggtctcccgggtccctcaggtaccgctggagaagttggcaagccaggagaaaggggt
cttcccggtgaattcggtctccctggtcctgctggtccaagaggagaacgtggtccccca
ggtgagagtggagctgctggtccttctggtcctattggaagccgaggtccctctggagcc
ccagggcctgatgggaacaagggtgaagctggtgcagtcggtgctccaggctctgctggt
gcctctggtcctggtgggcttccaggagagaggggtgctgctggcatacctggaggcaaa
ggagaaaagggtgaaactggtctcagaggtgaaatcggcaaccctggtagagatggtgct
cgaggtgctcctggtgctataggtgcccctggtcccgctggagcctcaggtgaccggggc
gaagctggtgctgctggtccttctggccctgctggtcctcgaggtagccctggtgaacgt
ggtgaggttggtcctgctggccccaatggatttgctggtcctgctggttctgctggccaa
cctggtgctaaaggagaaaagggaaccaaagggcctaagggagaaaatggcatcgttggt
ccaaccggacctgtcggagctgctggcccatctggtcctaatggcccacctggccctgct
ggaagtcgtggtgatggagggccccctggtatgactggcttccctggtgctgctggacgg
actggtccccccggacccagtggtattactggcccccctggtccccctggtgctgctggt
aaagaaggtattcgtggtccccgtggtgaccaaggtccagttggccgaactggagaaata
ggtgcatctggtccccctggatttgctggcgagaagggtccttctggagaacctggtacc
acaggaccccctggcactgcaggtcctcagggtcttcttggtgctcccggtattctgggt
ctccctggctctcgaggtgaacgtggcctgccaggtattgctggtgctctgggtgaacct
ggtcctctgggcattgcaggccctcctggggcccgtggtccccctggtgctgtgggcagt
cctggagttaatggtgcccctggtgaagccggtcgtgatggtaaccctggcagtgatggt
cccccaggtcgtgatggtcaacccggacacaagggagagcgtggttaccctggcaacatt
ggtcccactggtgctgcaggtgctcctggtcctcatggttctgtgggtcctgctgggaaa
catggaaaccgtggtgagcctggtcctgctggttctgttggtcccgttggtgctgtcggt
ccaagaggtcctagtggtcctcaaggtattcgaggtgacaagggagagcctggtgacaaa
ggggccagaggtcttcctggcttaaaaggacacaatggattacagggtcttcctggtctt
gctgggctgcatggtgaccaaggagctcctggtcccgtgggtcctgctggtcccaggggt
cctgctggtccttctggccccattggcaaagatggtagatctggacatcctggaccagtc
ggtcctgctggcgttcgtggctctcagggtagccaaggtcccgctggtccccctggtccc
cctgggcctcctgggcctcctggtgtcagcggaggaggctatgactttggtttcgaagga
gacttctacagggctgaccagcctcgctcacagccttcactcagacccaaggactatgaa
gttgatgcaactctgaaatctctcaataaccaaatcgagacccttctcactcctgaaggc
tctagaaagaaccctgcccgcacatgccgtgacttaagactcagccacccagagtggaag
agcgattactactggattgaccctaaccaaggatgcactatggatgccatcaaagtgtac
tgcgatttctctactggtgaaacctgcatccaggcccaacctgtcaacaccccagccaag
aatgcatacagccgtgcccaggccaacaagcatgtctggttaggagagaccatcaatggt
ggcagccagtttgaatacaacgcagaaggggtgtcctccaaggaaatggcaactcagctc
gccttcatgcgcctgctagccaaccgtgcttctcagaacatcacctaccactgcaagaac
agcattgcgtacctggacgaggagacaggccgcctgaataaggctgtcattctgcagggc
tccaacgacgtcgaacttgttgctgagggcaacagcagattcacctacactgtccttgtc
gatggctgctccaaaaagacaaatgaatgggacaagacaatcattgaatacaaaacgaat
aagccatctcgcctgccattccttgacattgcacctctggacatcggtggtactaaccaa
gaattccgtgtggaggttggccctgtctgtttcaaataa

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