KEGG   Rattus norvegicus (rat): 84390
Entry
84390             CDS       T01003                                 
Symbol
Hcn1
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
  KO
K04954  hyperpolarization activated cyclic nucleotide-gated potassium channel 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04929  GnRH secretion
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09152 Endocrine system
   04929 GnRH secretion
    84390 (Hcn1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    84390 (Hcn1)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Cyclic nucleotide-gated channel (HCN)
   84390 (Hcn1)
SSDB
Motif
Pfam: Ion_trans Ion_trans_N cNMP_binding TFIIA Ion_trans_2 DUF1759
Other DBs
NCBI-GeneID: 84390
NCBI-ProteinID: NP_445827
RGD: 620688
Ensembl: ENSRNOG00000055382
UniProt: Q9JKB0
Position
2:51228710..51632806
AA seq 902 aa
MEGGGKPNSASNSRDDGNSVYPSKAPATGPAAADKRLGTPPGGGAAGKEHGNSVCFKVDG
GGGEEPAGSFEDAEGPRRQYGFMQRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAG
FWIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFTEQTTTPWIIFNVASDTVFLLDLI
MNFRTGTVNEDSSEIILDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVEKGMDSEVYKTA
RALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHW
DGCLQFLVPLLQDFPPDCWVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSD
LWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKI
HDYYEHRYQGKIFDEENILSELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKL
RFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTA
SVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKKNSILLQKFQKDLNT
GVFNNQENEILKQIVKHDREMVQAIPPINYPQMTALNCTSSTTTPTSRMRTQSPPVYTAT
SLSHSNLHSPSPSTQTPQPSAILSPCSYTTAVCSPPIQSPLATRTFHYASPTASQLSLMQ
QPQPQLQQSQVQQTQPQPQPQPQQPQQQQQQQQQQQQQQQQQQQQQQPQTPGSSTPKNEV
HKSTQALHNTNLTREVRPLSASQPSLPHEVSTMISRPHPTVGESLASIPQPMATVHSTGL
QAGSRSTVPQRVTLFRQMSSGAIPPNRGVPPAPPPPAAVQRESPSVLNKDPDAEKPRFAS
NL
NT seq 2709 nt   +upstreamnt  +downstreamnt
atggaaggcggcggcaagcccaactccgcttccaacagccgcgacgatggcaacagcgtt
tacccctccaaggcgcccgcgacggggccggcggcggccgacaagcgcctggggaccccg
ccggggggcggcgcggccgggaaggaacacggcaactccgtgtgcttcaaggtggacggc
ggcggaggagaggagccggcgggcagcttcgaggatgccgaggggccccggcgacagtac
ggtttcatgcagaggcagttcacctccatgctgcagcctggggtcaacaaattctccctc
cgcatgttcgggagccagaaggcggtggagaaggagcaggaaagggttaaaactgcaggc
ttctggattatccatccgtacagtgacttcaggttttattgggatttaataatgcttata
atgatggttggaaatttggtcatcataccagttggaatcacattcttcacagagcaaaca
acaacaccgtggattattttcaatgtggcatcagatacagttttcctgttggacctaatc
atgaattttaggactgggactgtcaacgaagacagctctgaaatcatcctggaccctaaa
gtaatcaagatgaattatttaaaaagctggttcgtggtggacttcatctcctcgatcccg
gtggattatatctttcttattgtagagaaaggaatggattcggaagtttacaagaccgcc
agagcacttcggatcgtgaggtttacaaaaattctcagtctcttgcgtttattacgcctt
tcaaggttaattagatacatacaccagtgggaagagatattccacatgacatatgatctc
gccagtgcagtggtgagaatcttcaacctcattggcatgatgctgctcctgtgtcactgg
gatggctgtcttcagtttctggtccccctgctgcaggacttcccaccggattgctgggtt
tctctaaatgaaatggttaatgattcatgggggaaacagtattcctacgcactcttcaaa
gctatgagtcacatgctgtgcattggttatggcgcccaggcccccgtcagcatgtctgac
ctctggattaccatgctgagcatgattgttggggccacctgctatgccatgtttgtcggc
catgccacagctttgatccagtctctggattcttcaaggaggcagtatcaagagaagtac
aagcaagtagagcaatacatgtcattccacaagttaccagctgacatgcgccagaagata
catgattactatgagcaccgataccaaggcaagatcttcgatgaggaaaatattctcagt
gaacttaatgatcctctgagagaggaaatagtcaacttcaactgccggaaactggtggcc
accatgcctctctttgctaacgcggatcccaatttcgtgacggccatgctgagcaagctg
agatttgaggtgttccagcccggagactatatcattcgagaaggagctgtggggaagaaa
atgtatttcatccagcatggtgtggctggtgtcatcaccaagtccagtaaagaaatgaag
ttgacagacggctcttactttggagaaatatgcctgctgaccaagggccggcgcactgcc
agtgttcgagctgatacatactgtcgcctttactccctttcggtggacaatttcaacgag
gtcttggaggaatatccaatgatgagaagagcctttgagacagttgctattgaccgacta
gatcggataggcaagaaaaactctattctcctgcagaagttccagaaggatctgaacact
ggtgttttcaacaaccaggagaatgagatcctgaagcagattgtgaagcatgacagagag
atggtacaagcgatccctccaatcaactatcctcaaatgacagccctgaattgcacatct
tcaaccaccaccccaacgtcgcgcatgaggacccaatctccaccagtctacacagcgacc
agcctctctcacagcaacctgcactcacccagccccagcacacagacgcctcaaccctca
gccatcctttcaccctgctcctacaccacagcagtctgcagtcctcctatacagagcccc
ctggccacgcgaactttccattatgcctctcccactgcatcccaattgtcactcatgcag
cagcctcagccgcagctacagcaatcccaggtacagcagactcagccgcagccgcagccg
cagccgcagcagccgcaacagcaacaacagcagcaacagcagcagcagcagcagcagcaa
caacaacagcagcagcaacagccacagacacctggtagttccacaccgaaaaatgaagtg
cacaagagcactcaagctcttcataacaccaacctgaccagagaagtcaggcccctctct
gcctcgcagccttcgctgccccatgaggtctccactatgatctccagaccgcatcccact
gtgggcgagtccctggcctccatccctcaacccatggcaacagtccacagcactggcctt
caggcagggagcaggagcaccgtgccacagcgtgtcaccttgttcagacagatgtcctcg
ggagccattccccccaaccgaggagtgcctccagcacccccaccaccagcagctgtgcag
agagagtctccctcagtcttaaataaagacccagatgcagaaaaaccacgttttgcttcg
aatttatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (24)   

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