KEGG   Rattus norvegicus (rat): 84401
Entry
84401             CDS       T01003                                 
Symbol
Puf60
Name
(RefSeq) poly(U)-binding-splicing factor PUF60 isoform 2
  KO
K12838  poly(U)-binding-splicing factor PUF60
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    84401 (Puf60)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    84401 (Puf60)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 related factors
    84401 (Puf60)
 Complex B
    84401 (Puf60)
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 84401
NCBI-ProteinID: NP_001178809
RGD: 621674
Ensembl: ENSRNOG00000009960
Position
7:complement(109663490..109674443)
AA seq 563 aa
MATATIALVNGQQGGGSEPAAAAAAAAAAVVAAGDKWKPPQGTESIKMENGQSTGTKLGL
PPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAVTMGFGDPLSPLQS
MAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE
YEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQD
LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY
LRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLATPGLVSP
ALTLAQPLGALPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPK
KEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDID
DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMASETHKAIQALNGRW
FGGRKVVAEVYDQERFDNSDLSA
NT seq 1692 nt   +upstreamnt  +downstreamnt
atggcgacggcaactatagctctcgtcaatggccaacaaggaggggggtcggagccagca
gcagcggctgcagcggcggcggcggcagtggtggcagcaggagacaaatggaaacctcca
cagggcacagaatccatcaagatggaaaatgggcaaagcacaggcaccaagctggggctg
cctcccctgacgcccgagcagcaggaggccctccagaaggccaagaaatatgcaatggag
cagagcatcaagagtgtgctggtgaagcagaccatcgcccaccagcagcagcagctcacc
aacctgcagatggcagcagtgacaatgggctttggagatcctctctcacctttgcaatcg
atggcagctcagcggcagcgggcactggctatcatgtgccgggtgtatgtgggttccatc
tactatgagctgggagaagacactattcgccaggcctttgctccctttggccccatcaag
agcattgatatgtcctgggactccgttaccatgaagcataagggctttgccttcgtggag
tatgaggtcccagaagctgcacagctggctttggagcagatgaactctgtgatgcttggg
ggcaggaacatcaaggtgggaagacctagcaacatcggacaagcccaacccatcatagac
cagctggctgaggaggctagggctttcaaccgaatatacgtggcctccgtacatcaggac
ctgtctgatgatgatatcaagagtgtgtttgaagccttcggcaagatcaagtcttgtacg
ctggcccgggaccccacaactggcaagcacaagggctatggttttatcgaatatgagaag
gcccagtcgtcccaggatgctgtgtcctccatgaacctctttgatctgggtggccagtac
ttgagggtgggcaaggccgtcacacccccaatgcccctgctaacacctgccacgcctgga
ggtctcccgcctgctgctgctgtggccgcagctgcagccacagccaagattacagctcag
gaagcagtggctggagctgcagtgctgggtactttagccacaccaggactagtgtcccca
gcactgacactggcccagcccttaggggccctaccccaggctgtcatggctgcccaagcc
cctggagtcatcacaggtgtgacaccagcccgccctcctattccggtcaccatcccctct
gtgggagtggtgaaccccatcctagccagcccgccaacgctgggtctgttggaacccaag
aaggagaaggaagaggaggagctgtttccagagtcagagcggccagagatgttgagtgag
caggagcacatgagcatctctggcagcagtgctcgacacatggtcatgcaaaagctactc
agaaaacaggagtctacagtgatggttctccgaaacatggtggatcccaaggacattgat
gatgacctggagggagaggtgacagaggaatgtggcaaatttggtgctgtgaaccgggtc
attatctaccaagaaaaacagggcgaggaggaagatgcagaaatcatcgtcaagattttt
gtggaattttccatggcttcagagactcacaaggccatccaggccctcaatgggcgctgg
tttggtggtcgcaaggtggtggctgaagtgtatgaccaggagcgttttgataacagcgac
ctctctgcgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   RefSeq(pep) (8)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

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