KEGG   Rattus norvegicus (rat): 84474
Entry
84474             CDS       T01003                                 
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
  KO
K13177  ATP-dependent RNA helicase DDX1 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    84474 (Ddx1)
   03016 Transfer RNA biogenesis [BR:rno03016]
    84474 (Ddx1)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     84474 (Ddx1)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    84474 (Ddx1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    84474 (Ddx1)
SSDB
Motif
Pfam: DEAD Helicase_C SPRY ResIII CMS1 DUF5766 Paramyxo_PNT
Other DBs
NCBI-GeneID: 84474
NCBI-ProteinID: NP_445866
RGD: 619903
Ensembl: ENSRNOG00000006652
UniProt: Q641Y8 A6HAQ9
Position
6:complement(41725365..41756236)
AA seq 740 aa
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKATIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATRGLLRGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDSYVVKSQHTGNAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLDNGVDIVVGTPGRLDDLVSTGKLN
LSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKNHIRTDDVHAKDNTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFMQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq 2223 nt   +upstreamnt  +downstreamnt
atggcggccttctccgaaatgggtgttatgcccgagattgcacaagccgtggaggagatg
gattggcttctacccactgatatccaggcagaatctatcccattgatcctaggaggaggt
gatgtacttatggctgcagaaacgggaagtggaaaaactggtgcatttagtattccagtt
atccagatagtgtatgagactctgaaagaccaacaggaaggaaagaaagggaaagcaact
attaaaactggtgcttctgtgctcaacaagtggcagatgaacccatatgatagagggtct
gcttttgcaattgggtcagatggtctgtgttgtcagagcagagaggtgaaggagtggcat
gggtgcagagcgactagaggactgctgagagggaagcactactacgaagtatcctgtcat
gaccaagggctgtgcagagttgggtggtccaccatgcaggcttccttagacctgggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatctcataataaacaatttgat
aattatggagaggaattcactatgcatgacaccattggatgttacttagacatcgataaa
gggcacgtgaagttctctaagaatggaaaagaccttggtctggcatttgaaatacctgca
cacataaaaaaccaagccctcttccctgcctgtgttttgaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gcccctgatagttacgtcgtcaaatcgcagcacacaggtaatgcacaggtgtcacaaaca
aaatttctccctaatgctccaaaagctcttattgtggaaccctccagagagttagctgag
caaaccttgaacaatgtgaaacagtttaagaagtacatcgataatcctaaattgcgggag
cttctcataattggtggcgttgcagctcgggatcagctctccgttctggataatggggtt
gatattgtcgtcggtactccaggaagattagatgatttggtgtcaactggaaagctcaac
ttgtctcaagttagattcctggtcctggatgaagcagatgggcttctctctcaaggttat
tctgactttattaacaggatgcacaaccagattcctcagattacttctgatgggaaaaga
cttcaggtgattgtttgctctgctactctgcattcttttgatgtaaagaaactatctgag
aagataatgcattttcccacgtgggtggatttgaaaggagaagattctgttcctgatact
gtgcatcatgtcgttgttcctgtgaacccaaaaactgacaggctctgggaaaggctgggg
aagaaccacattcgaaccgatgatgtccatgcaaaggataacacaagacctggtgccaac
agtccagagatgtggtctgaagctattaaaatactgaagggggagtatgctgtccgagca
atcaaggagcacaagatggatcaagcaattatcttctgtagaacgaaaattgactgtgac
aacttggagcagtactttatgcagcaaggaggaggacctgataaaaaaggacaccaattc
tcatgtgtatgtcttcatggtgacagaaagcctcacgagagaaagcagaacttggaacga
tttaagaaaggagacgtaagattcctgatttgcacagacgtagctgccagaggaattgac
atccacggtgttccttatgttattaatgtcaccctgcctgatgaaaagcagaattatgtg
caccggattggcagagtggggcgagctgaaaggatgggcctggctatttccctggtggca
acagagaaagaaaaggtttggtatcacgtatgcagcaaccgtgggaagggatgctataac
actagactcaaggaagatggcggctgtactatctggtacaatgaaatgcagctactttct
gagatagaagaacacctgaactgtaccatttcccaggttgagccagatataaaggttcca
gtggatgagtttgatgggaaagttacatatggtcagaaaagagctgctggcggtgggaac
tataaaggccatgtggacatcctggcacctaccgttcaagagttggctgcccttgaaaag
gaagcacagacatctttcctacaccttggctaccttcccaaccagctgttcagaaccttc
tga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (7)   
   Pfam (7)   
All databases (32)   

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