KEGG   Rattus norvegicus (rat): 84486
Entry
84486             CDS       T01003                                 
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
  KO
K12828  splicing factor 3B subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    84486 (Sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    84486 (Sf3b1)
   03036 Chromosome and associated proteins [BR:rno03036]
    84486 (Sf3b1)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    84486 (Sf3b1)
 Complex B
    84486 (Sf3b1)
 Complex C
   U2 SnRNP specific factors
    84486 (Sf3b1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    84486 (Sf3b1)
SSDB
Motif
Pfam: SF3b1 HEAT_EZ Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central TALPID3
Other DBs
NCBI-GeneID: 84486
NCBI-ProteinID: NP_445878
RGD: 620148
Ensembl: ENSRNOG00000013516
UniProt: G3V7T6 A6IP03
Position
9:complement(63986829..64026723)
AA seq 1304 aa
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq 3915 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagactcacgaagatatcgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtggaagtgatagcaggtttgctggatatgtgacatcaattgctgcg
actgaacttgaagatgatgacgatgactactcatcatccactagcttgcttggtcagaag
aagcctggatatcatgcccccgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccattcgctgagcatcgtcctccaaagattgcagaccgggaagatgaatataaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacctacatggatgttatgcgagaacaacat
ttgactaaggaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagttgtcaacggagcagcagcatcccagcctccctcaaaacgaaaacggcgctgg
gatcaaactgctgaccagactcctggtgccactcccaaaaagctgtcaagttgggatcag
gcagagacccctgggcataccccttctttaagatgggatgagacaccgggtcgtgcaaaa
ggaagtgaaacacctggagcaaccccaggctcaaaaatatgggatcctacacctagtcat
acacctgcgggagctgctactcctggacgaggagatacaccaggccatgcaaccccgggc
catggcggtgcaacttccagtgcccgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtgggtgggctgagactcctcgaacagaccgaggtgga
gactctattggtgagacaccaactcctggagcaagtaaaagaaagtctcgttgggacgaa
acaccagctagtcaaatgggcggaagcactcctgttctgactccaggaaaaacaccaatt
ggcacaccagccatgaacatggccacccccactccaggtcacataatgagcatgactcct
gagcagcttcaggcttggcggtgggagagagagattgatgagcgcaaccgcccactttct
gatgaggaattagatgctatgttcccagaaggatacaaggtccttccccctccagctggc
tatgttcctattcgaactccagctcgaaagctgacagcaactcccacacctttgggcggt
atgactggttttcacatgcaaactgaagacagaactatgaaaagtgtcaacgaccagcca
tctgggaatcttccatttctaaaacctgatgacattcagtactttgacaaactattggtt
gatgtagatgagtcaacacttagtccagaagagcaaaaagaaagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgccttacgtcagattact
gataaagctcgagaatttggagctggaccactgtttaaccagattctgcctctattgatg
tcccctacacttgaggatcaagagcgacatttacttgtgaaagttattgacagaatattg
tataaacttgatgacttggtgcggccatatgtgcacaagattcttgtggttatcgagcca
ctgttgattgatgaagattactatgctagagtggaaggccgagaaattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgaatatgtccgaaacacaacagctagagcttttgctgttgtagcctctgctctgggc
attccttctttattgcctttcttgaaagctgtgtgtaaaagcaagaagtcttggcaagcg
aggcacactggtattaagattgtacaacagatagccattctcatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgagcatggtctcgtggatgagcagcagaaa
gttcggaccatcagtgctctggccattgctgctttggctgaggcagcaactccttatggt
attgagtcttttgattctgtgctcaagcccctatggaagggtattcgccaacatagagga
aagggtctggctgctttcttgaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgctaatccttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgttttgaaggtggtgaaacagtgttgtggaactgatggt
gtagaggcaaactacattaagacagagattcttccacctttctttaaacacttctggcag
cacagaatggctttggatagaagaaattaccgacagttagtcgatacaactgtggagttg
gcaaacaaagtgggcgcggcagagatcatatctaggattgttgacgatctgaaggatgag
gctgagcagtaccggaaaatggtgatggaaaccattgagaaaattatgggcaatctaggt
gcagcggatattgaccataaacttgaggaacagcttatcgatggcattctctatgctttc
caagaacagactacggaggattcagtaatgctgaatggctttggcacagtagtcaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttatggcgtttg
aataataaatcagcaaaagttaggcaacaagcagctgacttgatttctcgaactgctgtt
gtcatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtatgag
tatctgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggctatt
gtaaatgtaataggtatgcataagatgacaccaccaattaaagatctgttgcctagactc
acccccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttggg
cgtattgctgacaggggagctgagtatgtatctgcaagagagtggatgaggatttgcttt
gaacttttagagcttttaaaagctcacaaaaaagctattcgaagagctacagtcaataca
tttggttatatcgcaaaggctattggccctcacgatgtattggctacacttctaaacaac
ctcaaagttcaggaaaggcagaacagggtttgtacgactgtagcaatagccattgttgct
gaaacatgctcacccttcacagtactccctgccctgatgaatgagtacagagttcctgag
cttaatgttcaaaatggagtgttaaaatcactctccttcctgtttgagtatatcggtgaa
atgggaaaagactacatctacgctgtaacacctttacttgaggatgcattaatggatagg
gaccttgtacacagacagacagctagtgcagtggtacaacacatgtcacttggtgtttat
ggatttggctgtgaagattctctgaatcacttactgaactatgtgtggcctaatgtgttt
gagacatctccccatgtaatccaggcagttatgggagctctggagggcctgagagttgct
attggaccatgcagaatgttgcagtattgcttacagggcctgtttcacccagctcggaaa
gtcagagatgtatattggaaaatttacaactccatctacattggctcccaggatgctctc
atagcacattacccaaggatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   RefSeq(pep) (4)   
DNA sequence (14)   
   RefSeq(nuc) (4)   
   GenBank (5)   
   EMBL (5)   
Protein domain (8)   
   Pfam (8)   
All databases (39)   

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