KEGG   Rattus norvegicus (rat): 84494
Entry
84494             CDS       T01003                                 
Symbol
Trpc4
Name
(RefSeq) short transient receptor potential channel 4 isoform beta
  KO
K04967  transient receptor potential cation channel subfamily C member 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04360  Axon guidance
rno04929  GnRH secretion
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09152 Endocrine system
   04929 GnRH secretion
    84494 (Trpc4)
  09158 Development and regeneration
   04360 Axon guidance
    84494 (Trpc4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    84494 (Trpc4)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   84494 (Trpc4)
SSDB
Motif
Pfam: Ion_trans TRP_2 Ank_2 Ank Ank_4 Ank_3 PKD_channel Ank_5
Other DBs
NCBI-GeneID: 84494
NCBI-ProteinID: NP_001076584
RGD: 621276
Ensembl: ENSRNOG00000011133
UniProt: A6JVB2 F7F3R3
Position
2:140457841..140629556
AA seq 893 aa
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIREAKTEEGLTEENVKELKQDISSFRFEVLGLLRGSKLSTIQSANAASSASSADSDEKS
HSEEEITRQQAAGALERNIQLESQGLASRGDRSIPGLNEQCVLVDHRERNTDTLGLQVGK
RVCSSFKSEKVVVEDTVPIIPKEKHAQEEDSSIDYDLSPTDTVAHEDYVTTRL
NT seq 2682 nt   +upstreamnt  +downstreamnt
atggctcagttctattacaaacgaaatgtcaacgccccctaccgagaccgcatcccactg
aggatcgtcagggcagaatctgaactctcaccatcagagaaagcctacttgaatgccgtg
gaaaagggggactatgcaagcgtcaagaaatctctggaggaagccgagatttattttaaa
atcaacattaactgcattgacccccttgggaggactgctcttctcattgccattgaaaat
gagaacctggagctgattgaactgttgttgagtttcaatgtctatgttggcgatgcgcta
cttcacgccatcaggaaagaggtggttggagccgtggagctactgctgaaccacaaaaag
cccagcggagagaagcaggtgcctcccatcctccttgacaaacagttctctgaattcacc
ccagacatcacgcctatcatcttggctgcacatacaaataattatgagataatcaaactc
ttggtccagaagggtgtctcggtgcccagaccccacgaggtccgctgtaactgtgttgag
tgtgtctccagctcagacgtggacagcctcaggcactcacggtccaggctcaacatctac
aaggctttggccagcccctcgctcattgcgctgtcaagtgaagaccctttcctcaccgcc
tttcagttaagctgggagctgcaagaactgagtaaggtggagaatgaattcaagtcggag
tatgaggagctgtctagacagtgcaaacagtttgctaaggacctcctagatcagacacgg
agttccagagagctggaaatcattcttaattaccgtgatgacaatagcctgatcgaagaa
cagagtggaaatgatcttgcgaggctaaaattagccattaagtaccgtcaaaaagagttt
gttgctcagcccaactgccagcagctgctcgcttcccgctggtacgatgagttcccaggc
tggaggagaagacactgggcggtgaagatggtgacatgtttcataataggactactcttc
cccgtcttctccgtgtgctacctgatagctcccaaaagcccacttggactgttcatcaga
aagccatttatcaagtttatctgccacacagcctcctatctgacctttttgtttctgctg
ctgctagcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtggagtggatgatattaccgtgggtcctgggttttatatggggagagattaaacag
atgtgggatggcggacttcaggattacatccacgactggtggaatctaatggactttgtg
atgaactccttgtatctggcgacaatctccttgaagattgtcgcatttgtaaagtacagt
gctctgaacccacgggaatcatgggacatgtggcaccccaccctggtggcagaggcttta
ttcgcaattgcaaacatcttcagttccctccgcctgatctctctgttcactgccaattct
cacctggggcctctgcagatatctctgggaagaatgctcctggacatcctaaagttctta
ttcatatactgcctcgtgctgctagcttttgcaaatggcctaaatcaactgtacttctac
tatgaagaaacgaaggggttaagctgcaaaggcatacggtgcgaaaaacagaacaacgcg
ttctccacgttatttgagactctacagtccctgttttggtcaatatttggactcatcaat
ctctatgttaccaatgtcaaagcccagcatgagttcactgaatttgttggggccaccatg
tttggcacatataacgtcatctctctggttgtcctcctgaacatgctgatcgctatgatg
aataattcttaccaactaattgccgaccacgcagatatagagtggaaatttgctcgaaca
aagctttggatgagctactttgaagaagggggtaccctgcctacacctttcaatgtcatc
ccaagccccaagtccctgtggtacctggtcaagtggatatggacgcacttatgtaagaaa
aagatgagaagaaagccagaaagctttgggacaattgggcggcgtgctgctgataacttg
agaaggcatcaccaataccaagaggtgatgaggaatctggtgaagcggtacgtggcagcc
atgatcagagaggcaaaaactgaagaaggcttgacagaggagaatgttaaggaactaaag
caagacatttctagcttccgcttcgaagttctgggattgctccggggaagcaagctctca
acaatacagtcagccaacgcagcgagttcagccagctccgcggactccgatgagaagagc
cacagcgaagaagaaattactcgtcaacaggcggcaggagcacttgagagaaatatccaa
ctggaatcccaaggattagcttcacggggtgaccgcagcattcctggtctcaatgaacag
tgtgtgctagtagaccatagagaaaggaatacggacactttgggtttacaggtaggcaag
agagtgtgctcctccttcaagtcggagaaggtggtggtggaagacaccgtccctattata
ccaaaggagaaacacgcccaggaggaggactcaagcatagattatgatttaagccccacg
gacacagttgcccatgaagattatgtgaccacgagattgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (27)   
   RefSeq(nuc) (7)   
   GenBank (10)   
   EMBL (10)   
Protein domain (8)   
   Pfam (8)   
All databases (54)   

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