KEGG   Rattus norvegicus (rat): 85251
Entry
85251             CDS       T01003                                 
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain precursor
  KO
K06823  collagen type XVIII alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    85251 (Col18a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    85251 (Col18a1)
   00535 Proteoglycans [BR:rno00535]
    85251 (Col18a1)
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    85251 (Col18a1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   85251 (Col18a1)
Proteoglycans [BR:rno00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   85251 (Col18a1)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   85251 (Col18a1)
SSDB
Motif
Pfam: Endostatin Collagen Collagen_trimer Laminin_G_3 Laminin_G_2 DUF1554
Other DBs
NCBI-GeneID: 85251
NCBI-ProteinID: NP_445941
RGD: 70936
Ensembl: ENSRNOG00000001229
UniProt: A6JK98 F1LR02
Position
20:11473645..11582111
AA seq 1311 aa
MAPRWHLLDMLTSLVLLLVARVSWAEPENVAEDVGLLQLLGDPLPQKISQVEDPHVGLAY
VFGPYSKSSQMAQYHFPKLFFRDFSLLFEVRPTTEAAGVLFAITDAAQVVVSLGVKLSEV
RDGQQNISLLYTEPGASQTQTGASFRLPAFVGQWTHFALSVDGSSVALYVDCEEFQRVPF
ARSPHGLELERGAGLFVGQAGAADPDKFQGMISELRVRKTPRVSPVHCLDEEDDDDDRAS
GDFGSGLEESSNLHRQETYLRPGLPQPPPVTSPPLAGGSATEDSRTEEKEEEATVDSKGA
DTLPVTDSSGVWDGDVQNPGGGLIKGGLKGQKGEPGAQGPPGPAGPQGPAGPAVQSPSSQ
PVPGAQGPPGPQGPPGKDGIPGRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDP
GIGPRGPPGPPGPPGPSFRQDKLTFIDMEGSGGFSGDLESLRGPRGFPGPPGPPGVPGLP
GEPGRFGVNSSYAPGPAGLPGVPGKEGPPGFPGPPGPPGKEGPPGVAGQKGSVGDAGSPG
PKGSKGDLGPIGMPGKSGLPGLPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGTPLWSTA
RSSDGLQGDPGVTGPPGAKGEVGADGVQGIPGLPGREGVAGPPGPKGEKGTQGEKGNPGK
DGVGRPGLPGPPGPPGPVIYVSNEDRAVVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQG
LPGPKGEKGEPGSIFSPDGTALGQAQKGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRP
GTNGLKGEKGEPGEASLGFSMRGLPGPPGPPGPPGPPGVPVYDSNAFVESGRPGLPGQQG
VQGPPGPKGDKGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGRKGERGEPGAPGGGF
FSSSVPGPPGPPGYPGIPGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSF
PGPHRQTVSVPGPPGPPGPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAER
EELYVRVRNGFRKVLLEARTALPHGTDNEVAALQPPLVQLHEGSSYTRREHSYPTARPWR
ADDILANPPRLPDRQPYPGVPHHHHHHHHHHSSHEHRPPAHPSPSPAHTHQDFHPVLHLV
ALNTPLSGGMRGIRGADFQCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRSSVPIVN
LKDEVLSPSWDTLFSGSQGQLHSGARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMES
YCETWRTEATGVTGQASSLLSGRLLEQKAESCHNSYIVLCIENSFMTSFSK
NT seq 3936 nt   +upstreamnt  +downstreamnt
atggcgcccaggtggcacctcctggacatgctcaccagtttggtcttgctgctggtggca
cgcgtctcctgggcagagccagagaatgttgctgaagatgtggggctcctgcagctcctc
ggagaccccctaccccagaagatctcccaagtcgaagaccctcatgtcgggctggcctac
gtctttggaccatactccaaaagtagtcagatggcccagtatcacttccctaaactcttc
ttccgggacttttcgctgctgttcgaagtccggccaaccacagaggccgcaggggtgctg
tttgctatcacagatgccgcccaggtggtggtctcgctaggcgtgaagctctcagaggtc
cgagatggacaacagaacatctcattgctctacacggagcccggggccagccagacccag
acgggagccagcttccgcctacctgcgtttgttggccagtggacacacttcgcgctcagc
gtggatggaagctccgtggctctctacgtagactgtgaagagttccagagagtgccgttc
gctcggtccccacacggtctggagctagagcgtggcgctggcctctttgtgggtcaggct
ggagcagcggaccctgacaagttccagggaatgatctcagagctgagagtacgcaaaacc
ccccgggtgagccctgtgcactgcctggatgaagaagatgatgatgacgaccgggcatct
ggagattttggaagtggcctcgaagaaagcagcaatttacacaggcaggagacatatcta
cgacccgggctcccccagccacctcctgtcacttccccgcccttggctggaggcagtgcc
accgaagattctaggacagaagaaaaggaggaagaagccacggtagattctaaaggagct
gatacccttcctgtcacagattcaagcggtgtgtgggacggggatgtccagaaccctgga
ggtggcttgataaagggaggtctcaaaggacaaaagggagagccaggtgctcaaggccca
cctggcccagctgggccccagggtcctgccggtccagcggtacagagccccagctcacaa
cctgtccctggagcacaaggacccccgggacctcagggaccaccagggaaggatggcatc
ccgggaagggatggtgaaccaggcgaccctggtgaagacgggaggccgggtgacactgga
cctcaaggcttcccggggaccccaggagatgtgggccctaagggtgagaagggagatcct
ggtattgggcctcgaggacctccaggacctccgggaccaccaggaccctccttcagacag
gacaagctgaccttcattgacatggagggatctggtggtttcagcggagacctagagagc
ctcagaggcccacgaggcttccctggtcccccaggtccccctggtgtcccaggactgcct
ggtgaaccagggcgctttggagtcaacagttcctacgcaccaggacctgcaggccttcct
ggtgtgcctgggaaggaagggccccctggttttcctggtcccccaggacctccaggcaaa
gagggcccaccaggagtggccggccagaaaggcagtgttggcgatgcaggcagcccagga
cccaaggggagcaaaggagaccttgggcccattggtatgcctgggaagtctggcttgccg
ggactccctgggccagttggacccccaggacctccagggcctccagggccaccaggacca
ggatttgctgctggatttgatgacatggaaggttctggaacacctctctggtcaacagcc
cgaagctccgatgggctgcagggggatcctggagtgactgggccacctggggccaaggga
gaagttggagcagacggagtccagggcatccctggtctcccaggaagagagggtgtagct
gggcccccgggacccaaaggagagaaagggacccagggagaaaagggaaacccaggaaaa
gatggagtaggtcggccaggcctccctggccctccaggccccccagggcctgtgatctat
gtgtcaaatgaggatagagctgtagtaagcacgccgggacctgagggcaagccagggtac
gcaggctttcctggacctgctggaccgaagggtgacctgggttccaaaggcgagcagggt
cttccagggcccaagggtgagaagggagaaccaggcagtatctttagccctgatggcaca
gccctgggccaggcccagaagggagccaagggagaaccaggcttccgaggacccccgggt
ccttatggacggcctgggtacaagggtgaaattggcttccctggacggccgggtcgtccc
ggaacaaatggcttaaagggagagaaaggggagcctggagaggccagccttgggttcagc
atgaggggactgcctggcccccctgggcctccaggccccccaggtcctcccggagtgccc
gtctatgacagcaatgcatttgtggagtctggccgacctggactaccaggacagcaaggt
gtgcaggggcctccaggaccaaagggtgacaaaggagaggtgggcccacccgggccacca
gggcagttccccattgacctcttccacctggaagccgaaatgaagggggacaagggagac
cgaggggatgctggacggaagggagagaggggagagcctggggctcctggtggtggattc
ttcagctcaagtgtacctggaccacctggcccacctggataccctggaattccgggtcca
aaaggagagagcattcggggtccgcctggccctcctggcccgcagggacctcctggcatt
ggatatgaggggcgccagggccccccaggacctccaggacctccaggacctccctcattc
cctggccctcatagacagactgtcagtgttcctggtcctccaggcccacctggcccccca
ggtcccccaggagccatgggtgcctctgctgggcaggtaaggatctgggctacataccag
accatgttggacaagatacgtgaggtgccagagggctggctcatctttgtggccgagagg
gaagagctctacgtacgggttagaaatggcttccgtaaggtgctgctggaggcccggaca
gccctcccgcacgggacggacaacgaggtagctgccttgcaacctccattggtacagctt
catgagggcagttcatatacccggagggagcactcctatcccacggcacgaccctggcga
gcagatgacatcttggccaacccaccacgtctgccggaccgccagccttacccgggagtt
ccacaccaccaccaccaccaccaccaccaccacagttctcatgaacaccggccgccagcc
cacccctccccctcacctgcccatactcaccaggactttcacccagtgctccacctggtg
gcactgaacacccctctgtctggaggcatgcgtggtatccgtggggctgacttccagtgc
ttccagcaagcccgagccgtggggctgtctggcacctttcgggccttcctgtcctctagg
ctgcaggacctctacagcattgtacgccgtgctgaccgcagctctgtgcccatcgtcaac
ctgaaggatgaggtactatctcccagctgggacaccctgttctccggctcccagggtcaa
ctgcactctggggcccgcatcttttctttcgacggcagagacgtcctgagacacccagcc
tggccacagaagagcgtatggcatggctcagaccccagtgggcgcaggctgatggagagc
tactgtgagacgtggaggactgaagctactggggttacaggtcaggcctcttccctgctg
tcgggcaggctcctggaacagaaggccgagagctgccacaacagctatatcgtcctgtgc
attgagaatagcttcatgacctctttctccaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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