KEGG   Rattus norvegicus (rat): 85483
Entry
85483             CDS       T01003                                 
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform 2
  KO
K08060  MHC class II transactivator [EC:2.7.11.1]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04612  Antigen processing and presentation
rno05145  Toxoplasmosis
rno05152  Tuberculosis
rno05164  Influenza A
rno05340  Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04612 Antigen processing and presentation
    85483 (Ciita)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    85483 (Ciita)
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    85483 (Ciita)
  09174 Infectious disease: parasitic
   05145 Toxoplasmosis
    85483 (Ciita)
  09163 Immune disease
   05340 Primary immunodeficiency
    85483 (Ciita)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:rno01001]
    85483 (Ciita)
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:rno04054]
    85483 (Ciita)
Enzymes [BR:rno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.11  Protein-serine/threonine kinases
    2.7.11.1  non-specific serine/threonine protein kinase
     85483 (Ciita)
Protein kinases [BR:rno01001]
 Serine/threonine kinases: Other
  TAF1 family
   85483 (Ciita)
Pattern recognition receptors [BR:rno04054]
 Cytoplasmic pattern recognition receptors
  NOD-like receptors
   85483 (Ciita)
SSDB
Motif
Pfam: NACHT LRR_6 NLRC4_HD2 LRR_4 LRR_8 LRR_9 AAA_16
Other DBs
NCBI-GeneID: 85483
NCBI-ProteinID: NP_001257732
RGD: 619813
Ensembl: ENSRNOG00000002659
UniProt: A0A0G2K9Q5 A6K4J5
Position
10:complement(5646854..5694393)
AA seq 1073 aa
MRCQVPGPSGSYLQGHTLCATMELGSPEGSYLELLNSDADPLHLYHLYDQMDLAGEEEIE
LNSETDMDTINCDQFSKLLQDMEMDEETREAYANIAELDQYVFQDTQLEGLSKDLFIQHI
GPEEGFGENVEGPAESGEKPQKRRFPEEHAMDSKHRKLVPPSRTSLNYLDLPAGHIQIFT
TLPQGLWQISGVGTGLSSVLVYHGEMPQVNQLLSSSSPTVPSLPESPDRPGSTSPFAPST
ADLPGMPEPALTSRVNETEDTTPPSPCQEDPEPSIKLPKWPESVERFQHSLQDKYQALPG
SPSGPLVAMELVRARLERGSNKSQERELATPDWTERQLAHGGLAEVLRVVGDSRRSRETQ
VVAVLGKAGQGKSHWARTVSHIWAQGQLPQYDFVFYVPCQCLDRPGDTYHLRDLLCPPNL
QPLAMDDEVIDHIVRQPDRVLLILDAFEELEAQDSLLHGPCGPLSPEPCSLRGLLAGLFQ
RKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAQIYMRHYFENSGTAGSHDKA
LGLLEGQPFLLTHSHSPVLCSAVCQLSKALLDQGAEAQLPCTLTGLYVGLLGPAAQNSPP
GALVELAKLAWELGRRHQSTLQETQFPSVEVKTWAVAQGLMQQTTEAQLAFSSFLLQCFL
GAVWLAQCNEMKDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPRAHCLGALVEPA
MAAVADRKRKVLTRYLKRLKLGTLRAGRLLELLHCAHETQEPGIWKHVSHQLPGHLSFLG
TRLTAPDVYVLGRALETASQDFSLDLRQTGIEPSRLGDLVGLSCVTSFRASLSDTMALWE
SLQHQGETQLLQAAEEKFTIEPFKAKSPKDVEDLDSLVQTQRLRNPSADAAKDLPAIRDL
KKLEFALGPVLGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDKGVSKLSATFPQLKAL
ETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNNCICDEGAKSLARVLPDMVSLRVM
DVQFNKFTAVGAQQLTSSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARISLR
NT seq 3222 nt   +upstreamnt  +downstreamnt
atgcgctgccaggttcccggcccttctgggtcttacctgcaaggccatactctgtgtgcc
accatggagctggggtctccagagggcagctacctggagctccttaacagtgatgctgac
cccctacacctctaccacctctatgaccagatggaccttgctggggaggaagagatcgaa
ctcaactcagagacagacatggacaccatcaactgtgaccagttcagcaagctgttgcag
gatatggaaatggatgaagagacccgggaggcctatgccaatatcgcggaactggatcag
tacgtgttccaggatacccagctggagggcctgagcaaggacctcttcatacagcacatt
ggaccagaggaaggctttggtgagaacgtagagggccctgcagaatcaggagagaagcct
cagaagagacgcttcccagaagagcatgctatggactcaaagcacaggaaactagtgcct
ccctctaggacctcactgaactatttggatctccccgctgggcatatccagatcttcacc
actctgccccagggactctggcaaatctcaggggttggcacagggctctccagtgtccta
gtctaccacggtgagatgccccaggtcaaccaattactctcttcaagcagccccactgtc
cccagtctccccgagtccccagaccggcctggctccaccagccccttcgcgccatccaca
gctgacctgcccggcatgcctgaacctgctctgacctcccgtgtaaatgagacagaggac
acaacacccccctccccatgccaagaggatcccgagccttccatcaagcttccaaaatgg
ccagagtccgtggagcggttccagcactccctacaggacaagtaccaagcactgcccggg
agcccaagtggtcctctggtagccatggagctggtgcgggccaggttggaaagaggtagc
aacaagagtcaggaaagggagctggccactcctgactggacagagcgccagctagcccat
ggcggtctggccgaggtacttcgggttgtcggcgactccaggagatcacgagagacacag
gtggtcgctgtgctgggcaaggctggtcagggcaagagccactgggccaggacagtgagc
cacatttgggcacaaggccagttaccacaatatgactttgtcttctacgtcccctgtcaa
tgcttggatcgccctggggacacctaccacctgcgggatctgctctgtcccccgaacctg
cagccactggccatggatgacgaggtcattgatcatattgtgaggcagccggaccgtgtt
ctgctcatcctagatgcttttgaggagctagaggcccaagacagcctcctgcatggaccc
tgtggacctctgtccccagagccctgctccctccggggactgctggctgggctcttccag
cgtaagctgctgcgaggctgcaccctgctcctcacagcccggccccggggccgcctggct
cagagcctgagcaaggcagatgccatcttcgaggtgcccagcttctctacgaaacaggcc
cagatctatatgaggcactactttgagaactcagggacagcagggagtcacgacaaggcc
ctgggcctcctggagggccagccttttctcctcacccacagtcacagccctgttctgtgc
agtgccgtgtgtcagctctccaaggccctgctggatcagggcgcagaggcccagctacct
tgcacactcacaggactctatgttggcctgctaggccctgcagctcagaacagtcctcct
ggagccttagttgagttggccaagctagcctgggagctgggacggaggcaccaaagcacc
ttgcaggaaacccagtttccatccgtggaagtgaagacctgggctgtggcccaaggcttg
atgcagcagaccacagaggcccaactggctttctccagttttctgctacagtgcttcctg
ggtgctgtgtggctggcacagtgcaatgagatgaaagacaaggagctgccacagtacctg
gccttgaccccgaggaagaagcgaccctatgacaactggctggagggcgtaccacgcttt
ctggctggcttagttttccagcctcgagcccactgcctgggagctctggtggagcctgca
atggctgcagtggcagataggaaacggaaggttcttaccaggtacctgaagcgcttgaag
ctggggacacttcgggccgggaggttgctggagctgctacactgtgcccacgaaacacag
gaacctggtatttggaagcatgtttcacaccagctcccagggcacctctccttcctgggc
acacggctcacagccccagatgtgtatgttctgggcagggccttggagacagccagccag
gacttctccttggaccttcgtcagactggcatcgagccctccagactgggagacctcgtg
ggactcagctgtgtcaccagtttcagggcctccttgagtgacacaatggcattatgggag
tccctacagcatcagggagaaacccagctactccaggcggcagaggagaagttcaccatt
gagccatttaaggccaaatccccaaaggatgtggaagacctggacagccttgtgcagacc
cagaggctgagaaacccctcagcggatgcagccaaggatcttcctgccatccgggacctt
aagaagctagagtttgcattgggccccgtcttgggcccgcaggctttccccacactggcc
aagatccttccagcattctcttccctgcagcacctggacctggactcacttagcgagaac
aagatcggggacaagggtgtgtcgaagctctcagccaccttccctcagctgaaggccctg
gagacgctcaacctgtcccagaatagcatcaccgatgtgggagcttgcaagcttgcagaa
gccctgccggccctggccaagtccctcctaaggctgagcttgtacaacaactgcatctgt
gacgaaggggccaagagcctggcacgagtgcttccagacatggtgtccctccgggtgatg
gatgtccagttcaacaagttcacggctgtcggggcccagcagctgacctccagccttcag
aagtgccctcaggtggagacactggcaatgtggacacccactatcccctttggggtccag
gaacacctgcagcagctggatgcccggattagcctgagatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (11)   
   RefSeq(nuc) (5)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (42)   

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