KEGG   Rattus norvegicus (rat): 89808
Entry
89808             CDS       T01003                                 
Symbol
Cx3cl1
Name
(RefSeq) fractalkine precursor
  KO
K05508  C-X3-C motif chemokine 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04060  Cytokine-cytokine receptor interaction
rno04061  Viral protein interaction with cytokine and cytokine receptor
rno04062  Chemokine signaling pathway
rno04148  Efferocytosis
rno04668  TNF signaling pathway
rno05163  Human cytomegalovirus infection
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04668 TNF signaling pathway
    89808 (Cx3cl1)
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    89808 (Cx3cl1)
   04061 Viral protein interaction with cytokine and cytokine receptor
    89808 (Cx3cl1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    89808 (Cx3cl1)
 09150 Organismal Systems
  09151 Immune system
   04062 Chemokine signaling pathway
    89808 (Cx3cl1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05163 Human cytomegalovirus infection
    89808 (Cx3cl1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:rno04052]
    89808 (Cx3cl1)
Cytokines and neuropeptides [BR:rno04052]
 Cytokines
  Chemokines
   89808 (Cx3cl1)
SSDB
Motif
Pfam: IL8 CXCL16 CCDC84
Other DBs
NCBI-GeneID: 89808
NCBI-ProteinID: NP_604450
RGD: 620458
Ensembl: ENSRNOG00000016326
UniProt: O55145 A6JY48
Position
19:complement(10233326..10244856)
AA seq 393 aa
MAPSQLAWLLRLAAFFHLCTLLAGQHLGMTKCNITCHKMTSPIPVTLLIHYQLNQESCGK
RAIILETRQHRHFCADPKEKWVQDAMKHLDHQTAALTRNGGKFEKRVDNVTPRITSTTRG
LSPTALAKPESATVEDLTLEPTAISQEARRPMGTSQEPPAAVTGSFPSTSKAQDAGLAAK
PQSTGISEVAAVSTTIWPSSAVYQSGSSLWAEEKATESPPTIALSTQVSTTSSPKQNVGS
EGQPPWVQEQDSTPEKSPGPEETNPVHTDIFQDRGPGSTVHPSVAPTSSEKTPSPELVAS
GSQAPKVEEPIHATADPQKLSVFITPVPDSQAATRRQAVGLLAFLGLLFCLGVAMFAYQS
LQGCPRKMAGEMVEGLRYVPRSCGSNSYVLVPV
NT seq 1182 nt   +upstreamnt  +downstreamnt
atggctccctcacagctcgcgtggctgctgcgcctggccgcgttctttcatctgtgtact
ctgctggcgggtcagcacctcggcatgacgaaatgcaacatcacgtgccacaagatgacc
tcgccaatcccggtgaccttgctcatccactatcaactgaaccaggagtcctgcggcaag
cgcgccatcatcctggagacgagacagcacagacacttctgtgctgacccaaaggagaaa
tgggtccaagacgccatgaagcacctggaccaccagaccgctgccctgactagaaatggt
ggcaagtttgagaagcgtgtggacaatgtgacacctaggatcacctcgaccaccagggga
ctgtccccaactgccctggcaaagcctgagtcagccacagtggaagaccttactttggaa
ccgactgctatttcccaggaggcccgaaggcccatggggacttcccaagagccaccagca
gcagtgactggatcgtttccctcaacttccaaagctcaggatgcagggcttgccgccaag
cctcagagcactggaatttctgaggtggctgctgtctctaccaccatttggccgagttct
gctgtctaccaatctggatctagcctctgggccgaggaaaaagctactgaatcccccccc
actatagccctgtctactcaagtgtccaccacttcaagccccaagcagaatgttgggtct
gaaggccagcccccatgggtccaggagcaggactccactccagagaaatctccagggcct
gaggagacaaacccagttcatactgatattttccaagacagaggacctggcagcacagtc
catccctcagtggctcccacctcctctgaaaagacccccagcccagagctggtggcctcg
ggcagccaggctcctaaggtagaggaacccattcatgccactgcagatccccagaaactg
agtgtgtttatcactcctgtccctgactcccaggcagccacccggaggcaggcagtgggg
ttactggcctttcttggtctactcttctgtctgggggtggccatgtttgcctaccagagc
ctccagggctgtccccgcaaaatggcaggggagatggtggaaggcctccgctacgtcccc
cgtagctgtggcagtaactcgtacgtcctggtgccggtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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