KEGG   Rattus norvegicus (rat): 89809
Entry
89809             CDS       T01003                                 
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03030  DNA replication
rno03410  Base excision repair
rno03420  Nucleotide excision repair
rno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    89809 (Rfc1)
   03410 Base excision repair
    89809 (Rfc1)
   03420 Nucleotide excision repair
    89809 (Rfc1)
   03430 Mismatch repair
    89809 (Rfc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    89809 (Rfc1)
   03400 DNA repair and recombination proteins [BR:rno03400]
    89809 (Rfc1)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    89809 (Rfc1)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     89809 (Rfc1)
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT RuvB_N BRCT_2 Rad17 AAA_22 AAA_14 AAA_16 AAA_5 AAA_33 Zeta_toxin AAA_18 nSTAND3 AAA_17 AAA_7 AAA_30 RNA_helicase NTPase_1 TIP49 AAA_28
Other DBs
NCBI-GeneID: 89809
NCBI-ProteinID: NP_445999
RGD: 620619
Ensembl: ENSRNOG00000002855
UniProt: O88461 Q9Z2R7
Position
14:43319768..43395028
AA seq 1131 aa
MDIRKFFGVISSGKKPVNETVKKNEKTKPSEGTVKGKQGVKEAKVNNPCKEDASRPKQHN
KKKRIIYDSDSESEETVQVKNAKKKSEKLPVSCKPGKISRKDPVTYISETDEDDDFLCKK
AASKSKENGVSTNSYLGASNVKKNEENTKTKSKPLSPIKLTPTSVLDYFGTESVQRSGKK
MVASKKKESSQTPDDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLALLDEEPKTKK
ARKDSEEGESFSPAKAELSKAAKQKSPANEHFSIGRKTYSPAKYGKGRGSEGTKQPCRSA
HQKEACSSLKASSKSALMKAQEENSYKETELLAAKRESAIEPKGEKTTPRKTKGSPTKRE
SVSPEDSEKKRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIEREE
AKSLIERYGGKVTGNVSKKTSYLVMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPGK
KSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKLSPTKRELEPKKSKLTPLKHSPRKAVKE
EERVCPRGLDAKEPHGSHSASREECLLWVDKYKPTSLKNIIGQQGDQSCANKLLRWLRNW
HKSSPEEKKHAAKFGKVASKDDGSSFKAALLSGPPGVGKTTTASLVCQELGYSYVELNAS
DTRSKNSLKAIVAESLNNTSIKGFYTSGASPSVSARHALIMDEVDGMAGNEDRGGIQELI
GLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSAMLSIAFKEGLKIPPP
AMNEIILGANQDVRQVLHNLSMWCAQSKVLTYDQAKADSQRAKKDIRLGPFDVTRKVFAA
GEETAHMSLMDKSDLFFHDYSIAPLFVQENYLHVKPVAAGGDMKKHLMLLSRAADSICDG
DLVDNQIRSKQNWSLLPTQAIYASVVPGELMRGYMSQFPSFPSWLGKHSSMGKHDRTVQD
LSLHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGVQRVVTLMDTYYLVKEDFDNI
MEVSSWGGKPSTFSKLDPKVKAAFTRAYNKEAHLTPYSLQVVKASRPSIGPALDSEYNEE
SQEDATQSDEKEQDALETDAMIKQKKTRSSKPSKSEKEKESKKGKGKNSKK
NT seq 3396 nt   +upstreamnt  +downstreamnt
atggacattcggaaattctttggggttatatcaagtggaaaaaagcctgtaaatgagaca
gtaaagaagaatgagaagacaaaaccttcggagggcactgtcaaaggaaagcaaggagta
aaggaagccaaggttaataatccctgcaaagaggatgcctccagaccaaagcagcacaac
aagaaaaagaggatcatctatgactcagattcagaatcagaggagacagtgcaagtaaaa
aatgctaaaaagaaatcagaaaaattgccagtgtcttgtaaacctggtaaaatctctcgg
aaggatcctgttacctatatttctgagacagatgaagacgatgactttttatgtaaaaag
gcagcctccaaatcaaaagagaatggagtatctacaaacagttaccttggagcatcaaac
gtgaaaaagaatgaagaaaacactaagactaagagtaaaccgttatcaccaataaaacta
acaccgacatcagtgcttgattattttggaactgaaagtgtccagagatctgggaagaag
atggtggcgagcaaaaagaaagagtcttctcaaaccccagatgattccagattaaatgat
gaggccatcgccaagcagcttcagcttgatgaagatgcagagctggagaggcagttgcat
gaagatgaagaatttgcaagaacactggccttgttggatgaagaacctaagaccaaaaag
gctcgaaaggactctgaagagggagaatcattttcacctgccaaagctgagttaagcaaa
gcagcaaagcagaagagccctgctaacgagcatttctcaattggaagaaagacctacagt
cctgctaagtacggcaagggtagaggctcagaaggcaccaagcagccctgcagatcagct
caccagaaggaagcctgctcctctctcaaggccagctccaagtcggctcttatgaaagca
caagaagaaaattcttacaaagaaacagaactgctggctgcaaaaagagaaagtgccatt
gagcccaaaggagagaaaacaactcctaggaaaacgaaaggctctccaactaaaagagag
tctgtaagcccagaagattctgaaaagaagcgcaccaattatcaagcttatcgaagctac
ttaaatcgagaaggtcccaaagccctgggctccaaagaaatacccaagggagctgaaaac
tgcttggagggcctgacgttcgtgatcaccggagtgctggagtccatcgaacgagaagaa
gccaagtctctaattgaacgttatggggggaaagtaacaggaaacgtgagcaagaaaacc
agctacctcgtcatgggccgggacagcgggcagtccaagagtgacaaggcagcagctctg
ggaacaaaaatccttgatgaagacggcctgttggatctgattcgaactatgccgggcaaa
aaatccaagtacgaaatcgctgctgaggctgagatgaagaaagaaaagtccaaattggag
agaacaccccaaaaaaatgatcagggaaaaagaaaacttagtccaaccaagagggagttg
gagcctaaaaagagcaagctgactccccttaagcacagccctcggaaggcagtgaaggag
gaggaacgtgtgtgtccgaggggcttggacgccaaggagcctcatggcagccacagtgcc
agcagagaggagtgcctgctctgggtggataagtacaagcccacctcactcaagaacata
atcggacagcagggtgaccagagctgtgccaacaaactgctacgctggctcagaaactgg
cacaagagttctccagaagagaaaaagcatgcagcaaaatttggcaaagttgccagcaaa
gatgatggctccagtttcaaggcagcactgctgtctggccctccaggtgttggcaaaacc
actacagcttctcttgtgtgtcaggaattgggctacagttatgtggaactaaatgcgagt
gatactcggagtaagaacagtctgaaagcaattgttgctgagtcattgaacaacaccagc
atcaaaggcttttatacaagtggagcatctccttctgtaagtgcgaggcatgctctcatc
atggatgaagttgatggcatggcgggcaatgaggacaggggtggaattcaggagctaata
ggcctgataaagcatacgaaaattcccatcatttgtatgtgcaatgatagaaatcacccc
aaaatccgctcattggttcattattgttttgatcttcgtttccaaagacctcgagttgaa
cagattaagagtgcaatgctgtctattgcatttaaagagggattaaagatcccacctcca
gctatgaatgaaataattttgggagctaatcaagatgtcagacaggttttacacaatctc
agtatgtggtgtgcacagagtaaggtcctaacctatgaccaagccaaggctgattctcag
agggccaagaaggacatcagattgggcccatttgatgtcacccggaaagtgtttgcagct
ggagaggagactgcacacatgtcactgatggacaaatcggatctctttttccatgactat
tccattgcacccctctttgtccaggagaactacctccatgtaaagcctgtggctgcaggg
ggtgacatgaaaaagcacttgatgcttttaagccgggcagcagatagcatatgtgacggt
gacttagtggacaatcagatccggagtaagcaaaactggagtcttctgcccacacaggcc
atttacgccagcgttgttcctggagagttgatgaggggctacatgtctcagtttcccagc
ttcccaagctggctgggaaagcactcgtctatgggcaagcatgatcggactgttcaggac
ctgtccttgcacatgagtcttagaacttactccagcaaaaggacagtgaacatggattac
ctgtcacacatcagagacgcacttgtacgacccttgacctcacaaggagtagaaggggtt
cagcgtgttgtcacacttatggatacatactatttggtgaaagaagattttgacaacatc
atggaagttagcagctgggggggcaagcccagtaccttttccaagctggaccccaaggtg
aaagcagccttcacaagagcctataataaggaggcccacctgaccccatactcacttcag
gtggtaaaggcatcgaggcccagcataggtccagcactggattctgagtacaatgaagag
tcacaggaagatgccactcagtctgatgagaaagagcaggatgccctagagactgatgcc
atgatcaagcagaaaaagacgagatcttcaaagccttcaaaatcagaaaaagagaaggag
tccaaaaaaggaaaaggaaaaaattcgaagaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (17)   
   UniProt (2)   
   RefSeq(pep) (15)   
DNA sequence (31)   
   RefSeq(nuc) (15)   
   GenBank (8)   
   EMBL (8)   
Protein domain (22)   
   Pfam (22)   
All databases (84)   

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