KEGG   Rattus norvegicus (rat): 89823
Entry
89823             CDS       T01003                                 
Symbol
Trpc6
Name
(RefSeq) short transient receptor potential channel 6
  KO
K04969  transient receptor potential cation channel subfamily C member 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04022  cGMP-PKG signaling pathway
rno04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04022 cGMP-PKG signaling pathway
    89823 (Trpc6)
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    89823 (Trpc6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:rno04040]
    89823 (Trpc6)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   89823 (Trpc6)
SSDB
Motif
Pfam: TRP_2 Ion_trans PKD_channel Ank_2 Ank Ank_4 Ank_5 ING Cytochrom_B562
Other DBs
NCBI-GeneID: 89823
NCBI-ProteinID: NP_446011
RGD: 619788
UniProt: Q99N78
Position
8:14044216..14148808
AA seq 930 aa
MSQSPGFVTRRGGSPKAAPGAGARRNESQDYLLMDELGDDGYPQLQQPPYGYYPSFRGNE
NRLTHRRQTVLREKGRRLANRGPAYMFNDHSTSLSIEEERFLDAAEYGNIPVVRKMLEEC
LSLNVNCVDYMGQNALQLAVANEHLEITELLLKKENLSRVGDALLLAISKGYVRIVEAIL
NHPAFAEGKRLATSPSQSELQQDDFYAYDEDGTRFSHDVTPIILAAHCQEYEIVHTLLRK
GARIERPHDYFCKCTECSQKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVMTALELS
NELAVLANIEKEFKNDYRKLSMQCKDFVVGLLDLCRNTEEVEAILNGDAETRQPGDLARP
NLSRLKLAIKYEVKKFVAHPNCQQQLLSIWYENLSGLRQQTMAVKFLVVLAVAIGLPFLA
LIYWCAPCSKMGKILRGPFMKFVAHAASFTIFLGLLVMNAADRFEGTKLLPNETSTDNAR
QLFRMKTSCFSWMEMLIISWVIGMIWAECKEIWTQGPKEYLFELWNMLDFGMLAIFAASF
IARFMAFWHASKAQSIIDANDTLKDLTKVTLGDNVKYYNLARIKWDPTDPQIISEGLYAI
AVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIMVFVAFMIGMFNLYSYYIG
AKQNEAFTTVEESFKTLFWAIFGLSEVKSVVINYNHKFIENIGYVLYGVYNVTMVIVLLN
MLIAMINSSFQEIEDDADVEWKFARAKLWFSYFEEGRTLPVPFNLVPSPKSLLYLLLKFK
KWMSELIQGHKKGFQEDAEMNKRNEEKKFGILGSHEDLSKFSLDRNQLAHNKQSSTRSSE
DFHLNSFSNPPRQYQKIMKRLIKRYVLQAQIDKESDEVNEGELKEIKQDISSLRYELLEE
KSQNTEDLAELIRKLGERLSLESKQEESRR
NT seq 2793 nt   +upstreamnt  +downstreamnt
atgagccagagcccggggttcgtgacccggaggggtggctctccgaaggctgcccctgga
gccggcgcgcggcgcaacgagagccaggactatctgctgatggacgagctgggagacgac
ggctacccacagctccagcagccaccttatggctactatcccagcttccggggtaatgaa
aacagactgactcaccggcggcagacagttcttcgtgagaagggaagaaggttggctaat
cgaggaccagcatacatgtttaatgatcactcaaccagcctgtctattgaggaggaacgc
tttctggatgcagctgaatatggcaacatcccagtggtgcggaagatgctagaagaatgt
ctctccctcaatgttaactgtgtggattacatgggccagaatgccctacagttggcggtg
gccaatgagcacctggaaattacagagctgttactcaagaaggaaaacttgtctcgagtt
ggggatgctttacttttagctatcagtaaaggttatgtacggattgtggaggctattctc
aaccatccagcttttgctgaaggcaagaggttggcgacaagccccagccagtctgaactc
cagcaagatgacttttatgcctatgatgaagatgggacaagattctcccacgatgtgacc
ccaatcattctggctgctcattgccaggaatatgaaattgtgcataccctcctgagaaag
ggtgcccggatcgaacggcctcatgattatttctgcaagtgtacagaatgcagccagaaa
caaaagcatgactccttcagccactctagatccaggatcaatgcctacaaagggctggca
agtccagcatacctgtcactgtccagtgaagatccagtcatgacagctttagaactcagc
aatgagctggcagtgcttgccaacattgagaaagagttcaagaatgactacaggaagctg
tccatgcagtgcaaggattttgttgtgggtctcctggacctctgcagaaacacggaggaa
gtggaagccatcctgaacggggatgcagagactcgccagcccggggacctcgctcgtccg
aatctcagccgtttaaaactcgctattaaatatgaagtaaaaaaattcgtggcgcatccg
aactgccagcagcagctcctctccatatggtatgagaacctctctggtttacggcagcag
accatggcagtgaaattcctcgtggtcctcgctgtcgccattggactgcccttcctggct
ctcatatactggtgtgctccttgcagcaagatggggaagatattacgaggtccattcatg
aagttcgtagcacatgcggcctccttcaccattttcctggggctgctcgtcatgaatgca
gctgacagatttgaaggcaccaagctcctccctaatgaaaccagcacagataatgcaagg
cagctgttcaggatgaaaacatcctgtttctcatggatggagatgctcattatatcctgg
gtaataggaatgatatgggctgaatgtaaagaaatctggactcaaggccccaaagaatat
ttatttgagttgtggaatatgcttgactttggaatgttagcaatctttgcagcatcattc
attgcaagatttatggcattctggcatgcatccaaagctcagagcatcatcgatgcaaat
gacactttaaaggacttgacaaaagtcacactgggggacaacgtcaaatactacaatctg
gccaggataaagtgggaccctaccgatcctcagatcatctctgaaggtctttatgcaatc
gcggtggttttaagtttctccagaatagcttacattttaccggcaaatgaaagctttgga
cctctgcagatttcacttggaagaacagtgaaagatatcttcaaattcatggtcatattc
atcatggtgtttgtagcctttatgattggaatgttcaacctctactcctactacattggt
gcaaaacagaatgaagccttcacaacagttgaggaaagttttaagactctgttctgggct
atatttggtctttctgaagtgaagtcggtggtcatcaactacaatcacaagttcattgag
aacataggctatgttctgtatggagtctataatgtcacaatggtcattgttttgctaaat
atgttaattgcgatgatcaacagttcattccaggaaattgaggatgatgcggatgtggag
tggaagtttgcaagggccaaattgtggttttcctactttgaagagggaagaacactgcct
gtccccttcaatcttgtgccaagtccaaagtccctgctttatctcctattgaaatttaag
aaatggatgtctgagcttatccagggtcataagaaaggcttccaagaagatgcagagatg
aacaagagaaatgaagaaaagaaatttggaattttgggaagtcatgaagacctttcaaaa
ttttcacttgacagaaatcagctggcacacaacaaacaatcaagtacaaggagctcagaa
gatttccatttaaatagcttcagtaatcctccaagacagtatcagaaaatcatgaaaaga
ctcattaaaagatacgtactgcaggcccagattgataaggagagtgatgaagtgaacgaa
ggggagctgaaggaaattaagcaggacatctcaagtctccgttatgaactccttgaggaa
aaatcacagaacacagaggacctagcagaactcattagaaagcttggggagagactgtct
ttagagtcgaaacaagaggaaagccgcagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (30)   

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