KEGG   Rattus norvegicus (rat): 89827
Entry
89827             CDS       T01003                                 
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
  KO
K13182  ATP-dependent RNA helicase DDX39 [EC:3.6.4.13]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    89827 (Ddx39a)
Spliceosome [BR:rno03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    89827 (Ddx39a)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1
Other DBs
NCBI-GeneID: 89827
NCBI-ProteinID: NP_446015
RGD: 619920
Ensembl: ENSRNOG00000004373
UniProt: Q5U216 A6IYD0
Position
19:complement(41323465..41331413)
AA seq 427 aa
MAEQDVENELLDYDEDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggcagaacaggatgtggaaaatgagcttttggattatgatgaagatgaagagccccag
gtaccccaggagagcactccagctcccccgaagaaagatgtcaaaggatcttatgtctcc
atccacagttctggcttccgggactttctgctgaagccggagctcctgagagctatagtt
gactgtggctttgaacatccttcagaggtccagcatgaatgtattccccaggccattctg
ggtatggatgtcctgtgccaagccaagtctgggatgggcaagacagctgtgtttgtgctg
gccaccctgcagcagattgaacccatcaatggccaggtatcagtactggtcatgtgccac
acaagggagctggccttccagatcagcaaggagtatgagcgcttctcgaagtacatgccc
agtgtcaaggtatctgtgttctttggaggcctctccattaagaaagatgaagatgtgtta
aagaagaactgtccccatgttgtggtggggacaccaggccggatcctggccctcgtgcgg
agcaggagcctcaacctgaggaatgtgaagcactttgtgctagatgaatgtgacaagatg
ctggaacagctggacatgcgccgggatgtacaggagatctttcgtctgacaccccatgag
aagcaatgtatgatgttcagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcctatggaggtgtttgtggacgacgagaccaagctcacactgcatggg
ctgcagcagtattacgtcaaactcaaggacagtgagaagaatcgtaaactcttcgacctc
cttgacgtgctagagtttaaccaggtggtgatctttgtcaagtctgtgcagcgctgcatg
gccctggcccagctcctagtggaacagaattttccggctatcgctattcacagaggcatg
gcccaggaggagcgcctgtcccgataccagcagttcaaggacttccagcgtcgcatccta
gtggctactaatctgtttggcagaggcatggacattgagagagtcaacatcgtcttcaac
tatgacatgccagaggactcggatacctacctgcaccgagtggctcgtgctggtcgcttt
ggtaccaagggtctggcagtcacttttgtgtcagatgagaatgatgccaaaatccttaat
gacgttcaggaccggtttgaagtgaatgtggctgagcttccagaagaaatagatatctcc
acatacattgagcagagccggtaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (10)   
   RefSeq(nuc) (2)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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