KEGG   Rickettsia typhi Wilmington: RT0129
Entry
RT0129            CDS       T00193                                 
Symbol
rpoB
Name
(GenBank) RNA nucleotidyltransferase (DNA-directed)
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rty  Rickettsia typhi Wilmington
Pathway
rty03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rty00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RT0129 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rty03021]
    RT0129 (rpoB)
   03400 DNA repair and recombination proteins [BR:rty03400]
    RT0129 (rpoB)
Enzymes [BR:rty01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RT0129 (rpoB)
Transcription machinery [BR:rty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RT0129 (rpoB)
DNA repair and recombination proteins [BR:rty03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RT0129 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: AAU03614
UniProt: P77941
Position
161240..165364
AA seq 1374 aa
MVSLRDNIESQPLSHNRRVRKNFGHINLVADIPNLIEIQKNSYERNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDFEFDAKDVIYFRIDRKRKLYATTLLRAIGMNTEEIMKFYY
NSVTYKCIKNKGWSVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAQKYFSIGL
NNILVTHETLIGKYLSEDLRDPESDEILAKIGEMITADMLQVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDRETALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEITVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRIEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGT
GVEGVVAKDSGASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGHVIISGPKQITAGQTITTEMLK
GLSKGQLWQLIVEDANVMNEIEQIKIHYDEKKHALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKDNNIDIEQIKKFLLELYGKDINYILEGSEEGIIS
FCNKVSKGVYFATPVFDGAKVQDVKDMLKLADQDLSGQVKLIDGRTGEYFDRLVTVGHKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTASK
NT seq 4125 nt   +upstreamnt  +downstreamnt
atggtttcattaagggataatatagaatcacaacccttgtcacataatagaagagtaaga
aagaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagagaaactttttacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatcgatattaaactcaatttttcctatttcagattcctcaaatattgcaaat
ttagaatttgtaaaatatgaatttgatactccaaaatatgatgtagatgagtgtagtcaa
agaagtttaagttatgcagctcctcttaaagttactttaagattaagtatttgggatata
gatgaagatacaggtactagagaaattaaaggaattaaagagcaagaagtatatatgggc
gatattccattaatgactaaaaatggtacttttattattaatggtacggaaagagttgtt
gtatcacaaatgcatcgttcaccaggtgtattcttttatcatgatgaaggaaaagtacac
tcttctggtaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
tttgaattcgatgctaaagatgttatttattttaggattgatagaaaaaggaagctttat
gctactactttactgagagctattggtatgaatactgaagaaattatgaaattttattat
aattcagtaacttataaatgtattaaaaataaaggttggtctgttaaatttatacctcaa
catattactgctcatcgtttaacaagtgatttagtagatgcagatacaggaaatgtttta
ctgaaagcaggacaaaaaattacaccgcgtttagctcaaaaatattttagtataggtcta
aataatattttagtaactcatgaaactttaatcggtaaatatctatctgaagatttaaga
gatcctgaaagtgatgaaattttagctaaaattggtgaaatgattactgctgatatgtta
caagttattaatgatcttaaaatcaaaaatgttaatgtattagtaatcaaccctcaatca
ggtccatatataagaaatacattgttcgctgataaaaatcaagaccgtgagacagcatta
tgtgatattttccgagtgttaagaccaggcgaacctgctaatattgaagcagctgaaagc
ctattttataatttattctttgatgcagaaagatatgatctttcagaagttggacgaata
aaaatgaattctagattagaattgaatatttctgaagaaattacggttttaacaattgat
gatattaaaaatattgtaagaattttagtagagcttaaagacggtaaaggtattatagat
gatattgatcatttaggtaatagaagggttagatcggttggtgaattgatagaaaatcaa
tttagaataggtttagtacgtattgaaaaatctgtaattgagaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacttcgcaattatcccaatttatggatcaaacaaatccattatctgag
ataactcataaaagaagactttcagctcttggacctggaggtcttagccgagatcgagca
ggttttgaagtacgtgatgtacaccctactcattacggtcgtatttgtcctattgaaaca
ccagaaggtcagaatattggtttaatcaactctatggctacttatgctagaatcaataaa
catggttttatagagagtccgtatagaagagttaaagatggatacgtaacagatgaggtg
gtatatctttctgctattgaggaaggtaaatataaaatagggcaagcaaattctaaggtt
gatcaagatggaaaactgcaaggggagttcattaattgccgtgttgagggtggaaatttt
gtaatggtagaaccgtatgaagtggacttcattgatgtaacgcctatgcaggtagtatcg
gttgcagcttctcttatacctttcttagaaaacgatgatgcgaaccgtgctttgatgggc
tcaaacatgcaaagacaagctgttcctttaattaaaactgaagcaccttttgtaggtact
ggagttgaaggagtagttgctaaagattctggtgcttcagtgcttgcattacatgatggt
attgttgaacgggtagactcaaatagaattgtgattagaactctagaacaaaaagttgat
ggttctccttctgtggatatttataatttgttaaaattccaaaaatcgaatcataatact
tgtatcaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaatgatattata
gctgatggtcctagtacagataatggtgaaattgctttaggtagaaatgtacttgtggct
tttttaccttggaatggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtgtttacatcaattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacacgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaagttgggataatttatgtaggtgcagaagtaaaagccggggatatttta
gttgggaaagtaacaccaaaaagtgaatctcctattacacctgaagagaaactactgcgt
gctatttttggagaaaaagcttttgatgtaaaagattcatcactgcatgtaccttctgga
gttagtggcactgtagtagaagtaaggatattttctcgtagaggtgtagaaaaagatcag
agagctattgctattgaaaaacaacaaattgaaaaattagcaaaagatagggatgatgag
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtaggacatgtt
attattagcggccctaagcaaataacagcaggacagactattactactgaaatgctaaaa
ggtttatctaaagggcaactttggcaacttatagtggaagatgcaaatgtaatgaatgaa
atagagcagatcaaaattcattatgatgagaaaaaacatgctctcgataaaagatttgct
actaaggtagagaaattgcaaagcggtgatgatttacctcagggggctttaaaagtagtg
aaagtatttattgccactaagcataaattacaacctggtgataagatggcaggaaggcac
ggaaataaaggtgttatttcacgtattgtgcctgaagaagatatgccatttttagaagat
ggcactgtggtagatatagtgcttaatcctctaggtcttccatcccgtatgaatatagga
cagattttagaaacgcatcttggatgggcatcgataaatttagcaaaaaaaatctctacc
ttagtaaaggaatataaagataataatatagatattgagcaaattaagaaattcttactt
gagctgtacggcaaggatattaattatatacttgaagggtcagaagaaggaattatctct
ttctgtaataaagtaagtaaaggtgtatattttgcaactcctgtatttgatggtgcaaaa
gttcaggatgttaaggatatgttaaaacttgctgaccaagatctttcaggacaagtaaaa
ttaattgacggtagaactggtgaatattttgatcgtttagtcactgtaggacacaaatat
ttgctgaaattacatcatttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaacacagcaaccgcttggaggtaagtctcattttggtggacaacgttttggc
gaaatggaatgctgggcattacaagcttatggtgcagcttatacgttacaggaaatgtta
actgttaagtcagatgacgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaatgtaaagcttgaagtaactgctagtaaataa

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