KEGG   Rickettsia typhi Wilmington: RT0130
Entry
RT0130            CDS       T00193                                 
Symbol
rpoC
Name
(GenBank) RNA nucleotidyltransferase (DNA-directed)
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rty  Rickettsia typhi Wilmington
Pathway
rty03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rty00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RT0130 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rty03021]
    RT0130 (rpoC)
   03400 DNA repair and recombination proteins [BR:rty03400]
    RT0130 (rpoC)
Enzymes [BR:rty01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RT0130 (rpoC)
Transcription machinery [BR:rty03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RT0130 (rpoC)
DNA repair and recombination proteins [BR:rty03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RT0130 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Biotin_lipoyl_2 Peptidase_M23 RnfC_N
Other DBs
NCBI-ProteinID: AAU03615
UniProt: Q68XM7
Position
165666..169784
AA seq 1372 aa
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKPEKDGLFCARI
FGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRERMGHIELAAPVAHIWFLKSLP
SRISTLLDMTMRDVEKILYFENYVVVDPGLSILQKGELLTEEELQKAKDKYGEDAFTASI
GAEVIQQMLKELDFSKLKQELYDELHITSSEVKKKKLVKRLKLVEDFLESENKPEWMIMD
VLPVIPPEIRPLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRMVEAEKPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHIPLSIEAQLEA
RVFMMSTNNILSPANGRPIIVPDKDIVLGLYYLTIAFDNEVGEGMMFSDLAEMEHALYNK
FITIHTKIKYRRDQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKCINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKSTHINETQLEIK
EFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIATPPINDYPNHQRINAIYMMA
ISGARGSFQQIKQLGGMRGLMTKSNGQIIQTPIISNFKEGLTEFECFNSANGMRKGQIDT
ALKTASSGYLTRKLVDVAQDCIITEKDCGTDKGIEVKSVIEGGEIIVPLAEKILGRTAAI
DIFHPVTNDLILNKGELINESKLEQIESAGLDRIMIKSVLTCESSTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDAKVKIISRNVV
INSEERKIVMSRNCELLLLDDNGNEKARHKIPYGARLLVDDGDIVIKTQKLAEWDPYTIP
IITEKSGKVLFKDMVEGISIRDVTDEATGIPSKVIIESKQYSRGAELRPRIQLLDSKGEV
ITLSNGLEARYYLPVGAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEAR
RPKDHAVIAEVDGRVEFGKDYKSKRRIIIHPIDGTLSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTD
SGGTTLLVGEKIDRHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQET
TRVLTEAAIAGKVDKLRGLKENVIVGRLVPAGTGYFMDKMRKAAVKLDEENV
NT seq 4119 nt   +upstreamnt  +downstreamnt
atgagcgtagttaatttttatggacaattaagtaatactcaacaatttgaccagataagg
attaatatagcaagtcctgatcaagtgcgttcttggtcttttggtgaagtaacaaaacct
gaaacaattaattatcgaacttttaaacctgagaaagatggtttattttgtgcaagaatt
tttggtccagtaaaagattatgaatgtctctgtggcaaatataagcggatgaaaaatcgt
ggaattacgtgtgagaaatgtggtgttgaagttacagtttctagagtaagacgtgaacga
atgggacatattgagcttgcggcgcctgttgcgcatatttggtttttaaagtcacttcct
tcaagaattagtacgcttcttgatatgacaatgcgagatgtagaaaagattctttatttt
gaaaattatgtagtagttgatccagggttatcaattttacaaaaaggagaacttttgaca
gaagaagaattacaaaaagcaaaagataagtatggtgaagatgcatttactgcatctata
ggtgcagaagtaatacaacaaatgcttaaagagcttgatttttcaaagttaaagcaagaa
ttatacgatgaattacacattacttcttcagaagtcaaaaagaaaaaattagtaaagcgt
ttaaaattagtggaggattttttagagtcagaaaataagcccgaatggatgattatggat
gttttacctgtgattccgcctgaaattagaccgcttgttatgcttgatgggggaagattt
gctacttcggacttaaatgaactttatagaagagtaattaatagaaataatcgtttaaag
aaattaatagagtcaaaagctcctgatataatagtcagaaatgaaaaaagaatgttacaa
gaagctgtggatgcgttatttgataatggtcgtcgcggtagagcagccaaaaatgctaat
aagcgtccatttaagtcattaagtgatatgcttaaaggtaagcaaggtcgttttcgtcag
aacttactcggtaagagggttgattattcaggacgttcagttatcgtagtagggcctgag
cttaaacttcatcaatgcggtttacctaaaaaaatggctctagaactatttaagccgttt
atttattctaagcttgagttgtatggtattgctacaactattaaggctgctaaaagaatg
gtggaagcggaaaagcctgaagtttgggatgtacttgaagaggtaattagagagcatcca
gttttacttaatagagctccaactttacataggcttggtattcaagcatttgaacctcta
ttaatcgaaggtaaagcaatacagcttcatccacttgtttgtgctgcgtttaatgcggat
tttgatggtgatcaaatggcggtacatattccattatcgattgaagcacagcttgaagct
agggtatttatgatgtctacaaacaatatcttaagtcctgcaaacggacgtcctattatt
gtaccagataaagatatagtacttggtttatattatcttactattgcatttgataatgaa
gttggcgaagggatgatgttttcagatttagctgaaatggaacatgcgttatataataaa
tttataactattcatacgaagataaaatatcgcagagatcagttaaatgctgaaggtaaa
atggtacctgttatcattgatactacatatggtagattaatggttggtgagttattacct
tctaatcctaacatagagttcaagtgtattaataaacagctaactaaaaaagatatatca
ttagttatagatttagtttatcgtcactgtggtcaaaaagcaacagtcatttttgctgat
cagttaatgaaattaggtttcaaatatgcttgttcttcaggtatttcttttggaatggac
gatatggtagttccggaatctaagagtactcatatcaatgaaacgcagcttgagataaaa
gaatttgaacaacagtattcaaatggtttaattacttatggcgagaaatataacaaagta
gttgatgcttggtcaagatgtacagatagagtagcaaacgatatgatgaaagagattgct
acgccaccaattaatgattatccaaatcatcagagaataaatgctatatatatgatggct
atttccggagcaagaggttcttttcagcagattaagcagctaggtggtatgagaggttta
atgacgaaatcaaacggtcaaattatacaaacacctattatctctaactttaaggaaggc
ttaactgaatttgagtgttttaattctgctaatggaatgcgtaaaggacaaatagatact
gctttaaaaacagcaagctcaggttatctaacgagaaaattggttgatgttgcacaagat
tgtattattactgagaaagattgtggaactgataaaggaattgaagtaaagagtgttatt
gaaggcggagagattatagtacctttagctgaaaagattttaggtcgtactgctgccatc
gatatattccatcctgttactaatgatcttattctcaataaaggtgagcttattaatgaa
tcaaaattagaacaaattgagtcggctggacttgacagaattatgattaaatctgtatta
acttgtgaaagtagtactggtatatgtagcatctgttatggtagggatcttgctactggg
acattagtatcggagggtgaggcaataggtgttatcgctgcccaatctattggggaacct
ggtacacagcttacaatgagaacctttcatataggaggtgctgcaacaaagggtgctgaa
gtttcttctgtagaagcgtcatatgacgcaaaagtgaaaattataagtcgtaacgttgtt
attaattccgaagaacgcaaaattgttatgagccgtaattgtgaattattattgcttgat
gataacggcaatgaaaaagctcgtcataaaattccatatggtgctagattacttgttgat
gatggtgatattgtaattaaaacgcagaaactagcggaatgggatccttatactataccg
attattacagagaagtcaggtaaagttttattcaaagatatggttgagggtatttctatt
cgtgatgtaactgatgaagctacagggatacctagtaaagttattattgaatcaaagcaa
tattcacgtggtgcagaattacgtccgcgtatacagcttttagattctaaaggtgaagtt
ataaccttatcaaatggtttagaagctagatattacttaccagttggtgcagtgttaagt
gtagaagatggaatacaaatatcggtaggtgatatcattgcacgtatacctaaagaatca
actactactaaagatattactggtggtttaccaagagttgctgaacttgtagaagcaaga
cgtcctaaagatcatgctgtgatcgctgaggttgatggtagagtagaatttggtaaagat
tataaatctaaaagacgtattattatacatccaattgatggaacactttctattgaatat
atggtgcctaaaggtaagcatgttgtagtaaatgaaggggactttgttaaaaaaggtgat
ttattgattgatggtaatcctgtactacaagacattttaaaagtaatgggtgtagaggtg
ctcgcaaattatattgttaaggaggtgcaagctgtttatcgtctacaaggtgtaaaaatt
gatgataaacacatagaagttattattcgtcagatgttacaaaaagtagaggtgacggat
tcaggtggtactacattactagtaggtgaaaaaatagataggcatgaatttgatgaaata
aatgaaaaagctatgaaaaacggtttaaaacctgctgaagcacaattaatattacaaggt
attactaaagcatctctacaaactagatcgtttatttctgccgcatcattccaagagact
actagagttttaactgaagccgctattgctggtaaagtagataagttacgaggactaaaa
gaaaacgtgatagttgggcgattagtacctgctggcactggttactttatggataaaatg
cgtaaagcagctgtaaagcttgatgaagagaatgtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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