KEGG   Rickettsia typhi Wilmington: RT0248
Entry
RT0248            CDS       T00193                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
rty  Rickettsia typhi Wilmington
Pathway
rty03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rty00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RT0248 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rty03019]
    RT0248 (rne)
   03009 Ribosome biogenesis [BR:rty03009]
    RT0248 (rne)
Enzymes [BR:rty01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     RT0248 (rne)
Messenger RNA biogenesis [BR:rty03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RT0248 (rne)
Ribosome biogenesis [BR:rty03009]
 Prokaryotic type
  rRNA processing factors
   RT0248 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1
Other DBs
NCBI-ProteinID: AAU03729
UniProt: Q68XB3
Position
312244..314295
AA seq 683 aa
MHKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI
EYGMDKSGFLPFSEIHPNYYNLSITESTFPVNAFPEIALANITIEDDQEKPPVIYDSLID
SEEIDLKTIEDLVDSKFQSEFNLESADDIEIIQSCTTELNIPQYKPYKVQDVIRKNQVLL
VQVTKEERGNKCAAFTTYISLAGKYCVLMPNKSSQNGISRKISNGEERKRLKDILNKIVS
IQKNTYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFSAPCFIHEEDSIIRKTI
RDMCDHNVKEVVIQGQEAYEDASKFMQDLLPSELTKLKEHKNKTPIFTQFQVEEQLVKLY
QPIVTLPSGGYIVINPTEALISIDVNSGKSTSEKNIEETALKTNLEAAKEVAKQVKLRDL
SGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET
NSEVCFHCNGKGVIRASDANAMLILRTIENEIFEERIDIINVFTNIVSVIYLLNNKRAEI
KFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKQNNSVNTVKPVIQNHSADYTEEEPKK
EQLRKNKHKWKTANNNIVNAVKDQSVEQTVNIVEEMKVIENNGISLEETQVTPKNAKRKY
RNKNLNKKRLADSIVDGENGAES
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgcataaaaagattataattgatgctaatttcccaagtgaaacaagagtggttttatta
ggacaaagtaacaatatagaagatattgagtttcaaacaaccgtaagacaacaaaataaa
ggtaacatttatttagcaaaagtgacaagaatagaaccgtcgctacaagctgtgtttata
gagtatggaatggataaaagtgggtttttaccgtttagtgaaatccatcctaactattat
aatttgtctattactgagagtactttcccagttaatgcttttcctgaaatagctcttgcc
aatatcacgattgaggatgatcaagagaagccacctgttatatatgattctttgattgat
agtgaagaaattgatctcaaaacaatagaagatttagtagatagtaaatttcagtcagag
tttaatttagagtcagctgatgatattgaaattattcaaagttgtaccactgagttaaat
attccacaatataaaccatataaagtgcaagatgtaataagaaaaaaccaagtattatta
gtgcaagttactaaggaagagcgaggaaataagtgtgctgcatttactacttatatatct
ttggctggtaaatattgtgttttaatgcctaataaaagttcacaaaacggtatatcgcgt
aaaatatcaaacggcgaagaaagaaaaagactgaaagatattttaaataaaatagtaagt
attcaaaaaaatacttatagcgtaattgttagaactgcaggtagaggcagtagtacctta
gacttgaagaaagactataattacttagcaagattatggaataaaattcgtaaaagtact
attaaattttcagcaccgtgttttattcatgaagaagatagtataatacgtaaaactata
cgtgatatgtgtgatcacaatgttaaagaagtagtgattcaaggacaggaagcatatgaa
gatgcttcaaaatttatgcaagatttattaccttcagaacttacaaagctgaaagagcat
aaaaataaaacacctatatttactcaatttcaagtagaagagcaattagtgaaattatat
cagcctatcgttacactaccttcaggtgggtatatagttattaatcctacagaagcgttg
atttcaattgatgtcaattctggtaaatcaacttctgaaaaaaatattgaagaaactgcg
ctaaaaactaatttagaagcagcaaaagaagtagcaaagcaagtaaaacttagagattta
tcaggtttaatagtcgttgattttatagacatgagcgaagctaagaatcgtaaaatcatt
gaacgatcttttaaagaatttttaagtcgtgatcgtgctcgtatacaaaccggtaatatt
agtcagtttggactacttgaattttcaaggcagcgattacgttcctctttcttagaaact
aattcggaagtttgtttccattgcaatggtaaaggagttattagagcgagtgatgctaat
gctatgttaattttacgtactatagagaatgaaatttttgaagaaagaattgatataata
aatgtttttaccaatatcgtttcagtgatttatttacttaataataaacgtgctgagata
aaatttattgaagaaaaatacaatataaagcttaatttttattccgatcctaatgctaca
tcagatagttattcaattgaaaaagttaaattatttaagaaacagaacaatagtgttaat
actgttaagccggtaattcagaatcatagtgctgattatactgaagaagaaccaaaaaaa
gaacaattacgaaaaaataaacataaatggaaaacagctaataataacattgttaatgca
gtaaaagatcagagtgtagagcaaactgtaaacattgtggaagagatgaaggttatagaa
aataatggtatatccttagaagaaacacaagtcactccaaaaaatgcgaaacgtaagtac
cgtaataaaaatttaaataaaaaacgtcttgcggatagcatcgtggatggagaaaatggt
gctgagtcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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