KEGG   Saccharomyces cerevisiae (budding yeast): YDR049W
Entry
YDR049W           CDS       T00005                                 
Symbol
VMS1
Name
(RefSeq) Vms1p
  KO
K26089  ankyrin repeat and zinc finger domain-containing protein 1
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Brite
KEGG Orthology (KO) [BR:sce00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sce03009]
    YDR049W (VMS1)
Ribosome biogenesis [BR:sce03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    YDR049W (VMS1)
SSDB
Motif
Pfam: bVLRF1 Ank_2 zf-met zf-C2H2_jaz E6 zf-C2H2
Other DBs
NCBI-GeneID: 851618
NCBI-ProteinID: NP_010334
SGD: S000002456
UniProt: Q04311
Structure
Position
IV:553254..555152
AA seq 632 aa
MNSQKASKMTGSLKKNDLYIFDLSEQLLNSLKLMSFDSTLREVEVEKTSDNDRNKESGDL
QIARKKVTSNVMRCSVCQMSFDSRNEQKAHYQTDYHLMNVKRNLRGLDILSVEEFDALIS
KEHGIKSEDENSGGEQTSSDHEESEEASDRDPDLQTNNYMETIIENDLQKLGFQKDESDA
ISHINTQSPYIYFKSKYLQKNEVLAIYKSLFNKRSLSNPNEALTFWNSQENPMAISALFM
VGGGHFAGAIVSHQRLNVKGNAHKKDETLIEQAVNFLEHKTFHRYTTRRKQGGSQSAMDN
AKGKANSAGSALRRYNESALKTDIQGVLKDWEPYLSKCDNIFIRARNVSDKKIFTDNTVL
NKGDERIKSFPFTTNRPTVLELKKAWCELSYLKILPKPEPLAVKETVQKLEVSNKKDEFK
EKQEPLLEEIQTEEIISLLKKGRAPLLISFLKKNKLDGNFRLKPESKYSLTPTMLHYASQ
QGMKQMALILLSNIKCDPTIKNRLGRTAWDLNRNDDVRHAFQIARYNLGESFTNWDETHI
GQPLSREQVDEINEKKKAIENEKAEKLIKLELEAAKEKQRFAKDAERGPGKKLTNIPSIQ
QQNLNSLTDEQRRRLMREQRARAAEERMKKKY
NT seq 1899 nt   +upstreamnt  +downstreamnt
atgaattcacaaaaggcgagtaaaatgactggctcactaaaaaagaatgatctttatatt
tttgatttgtctgagcaacttctgaattcattgaaattgatgagctttgactccacactg
cgagaagttgaagtagagaagacatctgataatgatagaaacaaggagtctggagatctc
caaatagcaagaaagaaggtcacatcaaatgttatgcgttgtagtgtttgtcaaatgagc
tttgattccagaaatgaacaaaaggcccactaccagactgattatcatttgatgaatgtt
aagcgtaaccttagggggctggatatcctatccgttgaggaattcgatgcgctgatttct
aaggagcatggtatcaagtctgaagacgaaaattctggcggcgagcaaacttcaagcgat
cacgaagaaagtgaggaagccagcgatcgggacccggacctacaaactaataattatatg
gaaactataatcgaaaatgatttgcagaaattagggttccaaaaagacgagtcggatgct
attagccatattaatacccaatcgccctacatttatttcaaatcgaagtatcttcaaaag
aatgaggtcttggcgatttataagtctctatttaataaaaggagtctttccaaccccaat
gaagctttgactttttggaattcgcaagagaacccaatggccatttcagctctgtttatg
gtgggaggtggacattttgcgggagcaattgtttctcatcaaagactcaatgtcaagggg
aacgcgcacaagaaggacgaaaccttaattgagcaagcggtcaatttcttagagcacaag
acgtttcacaggtatactaccagaaggaagcaaggtggttctcagtcagcaatggacaat
gcaaagggaaaagctaactctgccggttcagcacttcgtaggtacaatgaaagcgcttta
aaaacagatatacagggtgtgttgaaggactgggaaccttatctgtcaaagtgtgataat
atttttattcgagctcgcaatgtcagtgataaaaaaatttttactgataataccgttctg
aacaagggtgatgaaaggataaagagcttcccttttaccacgaacaggcccactgtatta
gaattgaagaaggcatggtgcgaactttcctacctgaaaatattacctaagcctgaacca
ttggcagtgaaagaaacagtacaaaagttagaagtgtcgaacaaaaaggacgaatttaaa
gaaaaacaagaaccgttactggaagaaatccaaacagaagaaataatttctctgctgaag
aaaggaagggcaccgttattgatatccttcttaaaaaagaataagcttgatggaaacttt
cggttaaagcctgagagtaaatattccttaacccctaccatgttacattatgcatcgcag
caagggatgaaacagatggcactgattttgctctcaaatattaaatgcgatccaacgatc
aagaacagactaggaaggactgcgtgggatttgaatagaaacgacgacgtgagacacgcg
tttcaaattgcaagatacaatcttggagagtctttcactaattgggacgaaactcatatc
ggtcagccattgagcagagaacaagttgatgaaatcaatgaaaagaaaaaagcaatagag
aatgaaaaggcagaaaaactgattaaattggaattagaagccgccaaggaaaaacaaaga
tttgctaaagatgcagagaggggtccaggcaaaaagttaaccaatattccttcaattcag
caacaaaatttgaattctttgaccgatgaacagagacgcagattgatgagagaacaaagg
gctagagccgcagaagaaaggatgaaaaagaaatactga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (6)   
   Pfam (6)   
All databases (34)   

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