KEGG   Streptomyces coelicolor: SCO4654
Entry
SCO4654           CDS       T00085                                 
Symbol
rpoB
Name
(RefSeq) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sco  Streptomyces coelicolor
Pathway
sco03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SCO4654 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sco03021]
    SCO4654 (rpoB)
   03400 DNA repair and recombination proteins [BR:sco03400]
    SCO4654 (rpoB)
Enzymes [BR:sco01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SCO4654 (rpoB)
Transcription machinery [BR:sco03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SCO4654 (rpoB)
DNA repair and recombination proteins [BR:sco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SCO4654 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-GeneID: 1100095
Kitasato: SCO4654
Position
5078061..5081546
AA seq 1161 aa
MAASRNASTANTNNAASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVES
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKDRDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADEPLDAGVLTTDDVIATIKYLVKLHAGETETVGESGREIVVETDDIDHFG
NRRIRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRINPFGFIETPYRKVVEGQVTDDVDYLTADEEDRFVIAQANAALGDDMRF
AEARVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITTTNDDGTYITYRLAK
FSRSNQGTSVNQKVIVAEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVD
IILNPLAVPSRMNPGQVLEIHLGWLASRGWDVSGLAEEWAQRLQVIGADKVEPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq 3486 nt   +upstreamnt  +downstreamnt
ttggccgcctcgcgcaatgcctcgaccgcgaatacgaacaacgctgccagcaccgccccg
ctgcgcatctcctttgcaaagatcaaggagcccctcgaggttccgaacctcctggcgctg
caaaccgagagcttcgactggctcctcggcaacgacgcctggaaggctcgcgtcgagtcg
gctctggagtccggtcaggacgtccccaccaagtccggtctggaagagatcttcgaggag
atctcgccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgcttc
gagcctcccaagaacagcatcgacgagtgcaaggaccgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtgtcgcagctggtccgctcgccgggtgtctacttcgactcctccatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtgcgcatcgaccgcaagcgcaagcag
tccgtgaccgtcctcctcaaggccctcggctggaccaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccccccacgcgtgaggccgcg
cagacgctgctcgagaacctctacttcaacccgaagcgctacgacctcgccaaggtcggc
cgctacaaggtgaacaagaagctcggcgcggacgagccgctggacgccggcgtgctcacc
accgacgacgtcatcgccaccatcaagtacctggtgaagctgcacgccggtgagaccgag
acggtcggcgagtcgggccgggagatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgcatccgcaacgtcggcgagctgatccagaaccaggtccgtacgggtctcgcc
cgtatggagcgcgtcgtgcgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgtcgt
ctgaacgccctcggcccgggtggtctctcccgtgagcgggccggcttcgaggtccgcgac
gtgcacccgtcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggctcgctcgcctcgtacggccgcatcaaccccttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgagggccaggtcaccgacgacgtcgactacctgaccgccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgccgcgctgggcgacgacatgcggttc
gccgaggcccgcgtcctggtccgccgtcgtggcggcgaggtcgactacgtccccggtgac
gacgtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgcgatgatc
ccgttcctcgagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gcggtgccgctcatcaagagcgagtccccgctggtcggcaccggcatggagtaccgctcc
gccgccgacgccggtgacgtggtcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacatcaccacgaccaacgacgacggcacgtacatcacgtaccgcctggccaag
ttctcccggtccaaccagggcacctcggtcaaccagaaggtcatcgtcgccgagggcgac
cggatcatcgagggccaggtcctggccgacggtccggccaccgagaacggcgagatggcg
ctcggcaagaacctgctggtcgcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgcatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggcgagaccgagctg
acgccggaggagcgcctgctccgcgcgatcttcggtgagaaggcccgtgaggtccgcgac
acctcgctgaaggtcccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaggagggcgacgagcttccccccggtgtgaaccagctggtgcgcgtgtacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgccacggcaacaagggcgtc
atctccaagatcaacccgatcgaggacatgccgttcctggaggacggcacgcctgtcgac
atcatcctgaacccgctggctgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccgaggctgggacgtctccggcctcgcggaggagtgggcg
cagcgcctccaggtgatcggcgccgacaaggtcgagcccggcaccaacgtcgccaccccg
gtcttcgacggtgcgcgcgaggacgagctggccggcctgctccagcacaccatcccgaac
cgcgacggcgagcgcatggtgcttccgtccggcaaggcgcggctgttcgacggccgcagc
ggtgagccgttcccggagccgatctcggtcggctacatgtacatcctcaagctccaccac
ctggtcgacgacaagctgcacgcccggtcgaccggcccgtactcgatgatcacccagcag
ccgctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcg
ctggaggcttacggcgccgcgtacgccctccaggagctgctgaccatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccctgagccc
ggcatccccgagtccttcaaggtgctcatcaaggagatgcagtccctgtgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgtgacaccgacgaggacgtcttc
cgcgcagcggaggagctcggcatcgacctgtcgcggcgcgagccgagcagcgtcgaagag
gtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-Gene (1)   
   KITASATO (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (36)   

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