KEGG   Sinorhizobium meliloti 1021: SM_b20912
Entry
SM_b20912         CDS       T00058                                 
Name
(GenBank) putative ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sme  Sinorhizobium meliloti 1021
Pathway
sme03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sme00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SM_b20912
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sme03400]
    SM_b20912
Enzymes [BR:sme01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SM_b20912
DNA repair and recombination proteins [BR:sme03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SM_b20912
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: CAC49610
RhizoBase: SM_b20912
UniProt: Q92UC4
Position
pSymB:complement(1319810..1320904)
AA seq 364 aa
MARASSKKPRDTPPLDPMPARIDPCLASLVDRPPKGPDWAFEVKWDGYRIAVHIEPGRVR
ILTRGGYDWTERFPTIVDDARRLAVKTAILDGEAVVLDDKGRSDFGMLQRALGRLPSAVE
AGAIVFYAFDLLYLDGHDLRRLPLRERRRLLEPLVAAREGAVRLSEELQADGDEFFRVAC
AHGLEGIIAKHIEKPYRSGRGEWWQKITCKSRDSFVIVGFEPSTVPGHLGRLLLAAREGD
EPVYVGGCGTGWSNKLSRELRKLLEGMATKSPAVDLRRRAAVSVEPVHVADVEYRAWTDD
GKLRHASFKGIGSGRMTWRLFSGTLVVNSGCTEFTPNAVLESCRLTFVKRFATRGGDNTP
KIYQ
NT seq 1095 nt   +upstreamnt  +downstreamnt
atggcgagagcatcttcaaagaagccccgcgatacccctccgctagatcccatgccggcg
cgcatcgatccctgccttgcttcgctcgtagacaggccaccgaaggggcccgactgggcc
tttgaggtgaagtgggacggataccggattgccgtgcacatcgagcctggccgggtgcgg
atactcacgcgcggcggctacgactggacggaacgcttccccacgattgtcgacgacgcg
cggcgccttgccgtgaagacagccatccttgacggggaggccgtggtgctcgacgacaag
ggccggtcggacttcgggatgctgcagcgtgcgctcgggcgacttccttcggctgtcgaa
gccggcgccatcgtcttctatgccttcgacttgctctatctcgacggccacgatctgcgt
cggctgccgctgcgcgagcgccggcggttgctcgagccgctcgtcgccgctagggaaggg
gctgtccgcctttctgaggagctgcaggctgatggtgacgagttcttccgcgtcgcctgc
gcgcacggccttgaaggcatcatcgccaagcacattgagaagccatatcgctcaggccgg
ggcgagtggtggcagaagatcacctgcaaaagccgggatagcttcgtgatcgtcggcttc
gaaccgtcgacagtgcctggtcatctcggccggctactgctggcagcacgggaaggcgat
gaacccgtctatgtcggcggctgcggtaccggctggtcgaataagctttcgcgcgagctg
cggaaactgcttgaggggatggcgacgaaatcgccggccgtagatctgaggaggagagcc
gccgtctctgtcgagccggtgcatgtcgcggacgtcgagtatcgcgcctggacggatgac
gggaagctgcggcatgcatcgttcaagggcatcgggagcgggaggatgacgtggagatta
ttctctggaacgttagtggtgaattccggctgcacggagtttacgccaaatgctgttctc
gaaagctgccggttgacttttgtcaagcgcttcgctacccgtggtggagataatacccct
aaaatttaccagtga

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