KEGG   Schizosaccharomyces pombe (fission yeast): SPAC29A4.04c
Entry
SPAC29A4.04c      CDS       T00076                                 
Symbol
cbf5
Name
(RefSeq) putative pseudouridylate synthase Cbf5
  KO
K11131  H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    SPAC29A4.04c (cbf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:spo03009]
    SPAC29A4.04c (cbf5)
   03032 DNA replication proteins [BR:spo03032]
    SPAC29A4.04c (cbf5)
Ribosome biogenesis [BR:spo03009]
 Eukaryotic type
  Sno RNPs
   Box H/ACA snoRNPs
    SPAC29A4.04c (cbf5)
 Prokaryotic type
    SPAC29A4.04c (cbf5)
DNA replication proteins [BR:spo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    Dyskerin complex
     SPAC29A4.04c (cbf5)
SSDB
Motif
Pfam: DKCLD TruB_C_2 PUA TruB_N UPF0113
Other DBs
NCBI-GeneID: 2542481
NCBI-ProteinID: NP_594878
PomBase: SPAC29A4.04c
Ensembl: SPAC29A4.04c
UniProt: O14007
Position
I:5140322..5142190
AA seq 474 aa
MTDTHPGVDFMIKPEATSASKIDTAEWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAE
YVSSGVINLDKPANPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLIICNDRATRLVKS
QQSAGKEYVCVLRLHDSVEGERNVASAIETLTGALFQRPPLISAVKRQLRIRSIYESKLI
EFDNERNLAVFWASCEAGTYMRTLCVHLGLLLGVGGHMQELRRVRSGCLSENDDIVTMHD
VLDAQWIYDNTRDESYLRRVIRPLESLLVGYKRIVVKDSAVNAICYGAKLMIPGLLRYEA
GIEVNEEIVLITTKGEAIAVGIAQMSTVELSTCDHGVVAKVKRCIMERDVYPRRWGLGPQ
SMKKKTLKKEGKLDKYGRPNENTPADWSKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVN
GVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgacggacactcatccaggagttgattttatgatcaagcctgaggctacttctgcttct
aaaattgataccgctgagtggccattgctcttgaaaaactttgacaagttgctcgttcgt
actggtcattatacacctattccctgtggtaataaccctttgaaacgtccaattgcggaa
tatgtttcttcaggtgtcatcaatttagacaaaccggctaatccatcttctcatgaggtt
gttgcctgggttaaaaaaattcttcgtgttgaaaaaactggtcacagtggaactttggat
cccaaagttaccggatgtttgatcatttgcaatgacagagccacccgtttggtcaaatct
cagcagagtgccggtaaagagtacgtttgcgttttacgtcttcacgactcagttgagggt
gagcgtaatgttgcttctgccatcgagactcttaccggtgctttgtttcagcgtcctcct
ttaatttcagctgtcaagcgtcagttgcgtattcgtagtatctatgaatccaagttgatt
gagtttgacaatgagagaaaccttgccgttttttgggctagctgtgaagcaggtacttac
atgcgtactctttgcgtacatctcggtcttcttcttggtgttggaggccatatgcaagaa
cttcgtcgtgttcgttctggttgcctttcggaaaatgatgatattgtcaccatgcacgat
gtcttagatgctcaatggatttatgataacactcgtgatgaatcttatttacgtcgtgtt
atccgtccattggaatctctcctcgtaggctataagagaattgtggtaaaggatagtgcc
gtcaatgccatttgctatggtgcaaaacttatgatacctggtttacttcgttacgaagct
ggtattgaagttaacgaagagattgtccttattactaccaagggtgaagctatcgctgtg
ggtattgcacaaatgtctaccgtcgagctttcgacttgtgatcatggtgttgttgccaag
gttaagcgttgtattatggagagagatgtgtatcctagacgttggggtttgggccctcaa
agtatgaaaaagaaaactttgaagaaagaaggaaaacttgataaatacggacgtcctaat
gaaaacacacccgcggattggtctaaatcttatattgactactctgatcctaatgcagag
gttgcaaagcctgctccagttgttgcgcctgcagcacctactgttgaagctgaagtcaat
ggagtcgaagacagcaagaagcgcaaatcggtagaatcatctgagaaggatgaggatgaa
gctgctaagaaagaggaaaaacggcggaaaaaggaagctaagaaggagaagaaggaaaag
aaggagaaaaaagaaaaaaaggagaagaagaagaagtctgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (42)   

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