KEGG   Schizosaccharomyces pombe (fission yeast): SPAC2G11.06
Entry
SPAC2G11.06       CDS       T00076                                 
Symbol
vps4
Name
(RefSeq) putative AAA family ATPase Vps4
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03250  Viral life cycle - HIV-1
spo04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    SPAC2G11.06 (vps4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    SPAC2G11.06 (vps4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:spo04131]
    SPAC2G11.06 (vps4)
   03400 DNA repair and recombination proteins [BR:spo03400]
    SPAC2G11.06 (vps4)
Membrane trafficking [BR:spo04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    SPAC2G11.06 (vps4)
DNA repair and recombination proteins [BR:spo03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    SPAC2G11.06 (vps4)
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 RuvB_N AAA_14 AAA_22 AAA_5 TIP49 AAA_18 DUF815 IstB_IS21 AAA_2 RNA_helicase AAA_17 AAA_25 AAA_33 AAA_24 Parvo_NS1 nSTAND3 AAA_28 NACHT Mg_chelatase DUF5906 PhoH bpMoxR Torsin Viral_helicase1 FtsH_ext
Other DBs
NCBI-GeneID: 2542054
NCBI-ProteinID: NP_593086
PomBase: SPAC2G11.06
UniProt: Q09803
Position
I:817996..819739
AA seq 432 aa
MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKV
IEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAIL
VEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAK
AVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG
ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHAR
ARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEVY
DNKSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTVRDFYSAVRKVKPTLNAGDIEK
HTQFTKDFGAEG
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgtccaatccagattgtttaagtaaagcaatttcattagtaaaaactgctattgataat
gacaatgccgagcaatatcctgatgcttacaaatattatcaaagtgcactagattatttt
atgatggccctaaaatatgaaaaaaatgaaaaatctaaagaaataattcgttcaaaagtt
atcgaatatctagatagagcggagaagctcaaggtttatttacaggagaaaaacaatcaa
atttcttcaaaaagtagagtctctaatggaaatgtagaggggagcaattctccaaccgct
aatgaagcgttagactctgatgcaaaaaagttaagaagtgcattgactagtgcaatttta
gtagaaaaaccaaacgttcgttgggatgatatagcgggactagaaaacgcaaaagaagct
ttgaaagagacagttttgctacctattaagctgccgcaattattttcacacggtagaaag
ccttggtcaggaatattgctctatggtcctcctggtactggtaaatcgtaccttgcaaaa
gcagtcgctactgaagctggttctactttcttttcgattagctcctcagatttagttagt
aaatggatgggtgaaagcgaaaggcttgttcgtcaactttttgaaatggcgcgtgaacaa
aaaccatctatcattttcattgatgaaatcgattcactgtgcggaagcagaagcgaaggt
gagagtgaatcttctcgaaggattaagacagaatttttggtacaaatgaatggagttgga
aaggatgaaagtggagttctggttctgggtgccacgaatattccttggactcttgattct
gctattcgccgacgtttcgaaaagcgtatttacattcccctgcctaatgctcatgcccgc
gctcggatgttcgagcttaatgtcggtaaaataccttcggaactgacctcacaagatttc
aaagaacttgctaaaatgaccgatggctactcgggttcagatatttctattgttgttcgt
gatgcaataatggagcctgtaagacgaattcacacagctacccatttcaaagaggtatat
gataacaagtctaataggacccttgtaactccttgttctcctggtgatcctgatgcattt
gaatctagttggctagaggtgaatcctgaagacattatggaaccaaaacttactgttcga
gatttctacagtgcagttcgtaaagtcaagcctacgcttaatgctggtgatatagaaaag
cacacacaatttacaaaggactttggagcagagggatag

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