KEGG   Schizosaccharomyces pombe (fission yeast): SPBC1289.03c
Entry
SPBC1289.03c      CDS       T00076                                 
Symbol
spi1
Name
(RefSeq) Ran GTPase Spi1
  KO
K07936  GTP-binding nuclear protein Ran
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03008  Ribosome biogenesis in eukaryotes
spo03013  Nucleocytoplasmic transport
spo03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPBC1289.03c (spi1)
   03008 Ribosome biogenesis in eukaryotes
    SPBC1289.03c (spi1)
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    SPBC1289.03c (spi1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC1289.03c (spi1)
   03009 Ribosome biogenesis [BR:spo03009]
    SPBC1289.03c (spi1)
   03016 Transfer RNA biogenesis [BR:spo03016]
    SPBC1289.03c (spi1)
   03036 Chromosome and associated proteins [BR:spo03036]
    SPBC1289.03c (spi1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:spo04147]
    SPBC1289.03c (spi1)
   04031 GTP-binding proteins [BR:spo04031]
    SPBC1289.03c (spi1)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     SPBC1289.03c (spi1)
Ribosome biogenesis [BR:spo03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    SPBC1289.03c (spi1)
  Pre-60S particles
    SPBC1289.03c (spi1)
Transfer RNA biogenesis [BR:spo03016]
 Eukaryotic type
  tRNA transport factors
   tRNA export factors
    SPBC1289.03c (spi1)
Chromosome and associated proteins [BR:spo03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     SPBC1289.03c (spi1)
   Spindle formation proteins
    SPBC1289.03c (spi1)
Exosome [BR:spo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   SPBC1289.03c (spi1)
GTP-binding proteins [BR:spo04031]
 Small (monomeric) G-proteins
  Ran Family
   Ran
    SPBC1289.03c (spi1)
SSDB
Motif
Pfam: Ras Roc Arf Gtr1_RagA G-alpha MMR_HSR1 RNA_helicase Pox_A32 AAA_16 AAA_7 AAA_24 AAA_22 DUF5906 AAA_33 TsaE Septin
Other DBs
NCBI-GeneID: 2540149
NCBI-ProteinID: NP_596827
PomBase: SPBC1289.03c
Ensembl: SPBC1289.03c
UniProt: P28748
Position
II:complement(4386149..4387392)
AA seq 216 aa
MAQPQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICF
NVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCG
NKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPA
LAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDDADL
NT seq 651 nt   +upstreamnt  +downstreamnt
atggctcaaccacaaaacgttcctacctttaagcttgtacttgtcggcgatggtggtacc
ggtaagaccacgttcgtcaagcgtcatttgactggtgaatttgaaaagaagtatattgca
actttgggtgttgaggtccatcctttgcattttcatactaattttggtgaaatttgcttt
aatgtttgggataccgctggtcaagaaaagttaggtggccttcgtgatggttactatatt
caaggtcaatgtggtattatcatgtttgatgttacttcccgtattacctataagaatgtt
ccccattggtggcgtgatcttgtccgtgtttgtgaaaacattcccattgttctttgcggt
aacaaagttgatgttaaagagcgtaaagtcaaggctaaggctatcactttccatcgcaag
aaaaaccttcaatactacgacatctccgccaagtccaattataacttcgaaaaacctttc
ttatggcttgcccgtaagctggttggcaaccccaacctggagtttgttgcttcgcctgcc
cttgctcctcctgaggttcaagtcgatcagcaattgttagctcaataccaacaggaaatg
aacgaggctgctgctatgcctttacctgatgaggatgacgctgatttgtaa

  All links  
Ontology (7)   
   KEGG BRITE (7)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (127)   
   KEGG ORTHOLOGY (1)   
   RefGene (118)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (158)   

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