KEGG   Schizosaccharomyces pombe (fission yeast): SPBC20F10.01
Entry
SPBC20F10.01      CDS       T00076                                 
Symbol
gar1
Name
(RefSeq) H/ACA snoRNP pseudouridylase subunit Gar1
  KO
K11128  H/ACA ribonucleoprotein complex subunit 1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    SPBC20F10.01 (gar1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:spo03009]
    SPBC20F10.01 (gar1)
   03032 DNA replication proteins [BR:spo03032]
    SPBC20F10.01 (gar1)
Ribosome biogenesis [BR:spo03009]
 Eukaryotic type
  Sno RNPs
   Box H/ACA snoRNPs
    SPBC20F10.01 (gar1)
DNA replication proteins [BR:spo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (animals)
    Dyskerin complex
     SPBC20F10.01 (gar1)
SSDB
Motif
Pfam: Gar1
Other DBs
NCBI-GeneID: 2540705
NCBI-ProteinID: NP_596365
PomBase: SPBC20F10.01
Ensembl: SPBC20F10.01
UniProt: Q06975
Position
II:3283347..3284486
AA seq 194 aa
MSFRGGRGGGFRGGRGGSRPFTPSGPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPI
YLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSFKVGDKVYLSGDKLIPLDRFLPKPK
TVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRG
GFRGGSRGGFRGRF
NT seq 585 nt   +upstreamnt  +downstreamnt
atgagttttagaggcggtcgcggtggtggatttagaggaggacgaggtggatctcgtcct
tttactccttcaggtccacccgatcaagtcattgaacttggattattcatgcacgattgt
gaaggagaaatggtttgccagtcaaccaatgttaaaataccttatttcaatgcccctatt
tatctggagaacaagtcccaaattggtaaaatagatgaagtctttggccctatgaaccaa
gtatattttactgtgaagccttctgagggaattgtttccagctcattcaaggttggtgat
aaagtgtaccttagcggtgataaactaattcctttggatcgtttcctgcctaaacctaag
acagttgggcctaagaagcctaagggagctcgtaatggacctgcaggccgtggtggtcgc
ggtggtttccgcggcggccgtggtggttcaagaggtggatttggcggtaattcaagaggt
ggatttggcggcggttcaagaggtggatttggcggcggttcaagaggtggttcacgagga
ggtttccgtggtggctccagaggtggtttccgtggcagattctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (38)   

Download RDF
DBGET integrated database retrieval system