KEGG   Schizosaccharomyces pombe (fission yeast): SPBC887.14c
Entry
SPBC887.14c       CDS       T00076                                 
Symbol
pfh1
Name
(RefSeq) DNA repair and recombination protein
  KO
K15255  ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:spo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spo03032]
    SPBC887.14c (pfh1)
   03029 Mitochondrial biogenesis [BR:spo03029]
    SPBC887.14c (pfh1)
Enzymes [BR:spo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     SPBC887.14c (pfh1)
DNA replication proteins [BR:spo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    SPBC887.14c (pfh1)
Mitochondrial biogenesis [BR:spo03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Mitochondrial DNA maintenance factors
    SPBC887.14c (pfh1)
SSDB
Motif
Pfam: PIF1 AAA_30 AAA_19 Pif1_2B_dom AAA_22 Herpes_Helicase Mg_chelatase AAA_7 AAA_11 ATPase_2 UvrD_C_2 SLFN-g3_helicase NACHT NTPase_1 T2SSE RNA_helicase ABC_tran AAA AAA_16 NB-ARC TniB ResIII TrwB_AAD_bind RsgA_GTPase PhoH Sigma54_activat AAA_5
Other DBs
NCBI-GeneID: 2541213
NCBI-ProteinID: NP_596488
PomBase: SPBC887.14c
UniProt: Q9UUA2
Position
II:complement(3567593..3570555)
AA seq 805 aa
MFSCQSLYKFSHSFRKRIPVMFQRAQQKSSLLHTQNESSHQPSLNKLGGFSSASLNFNSS
RSSTNDDQQTFSSQSDNLPSSPITLPAKRGRSAASLKQLDNTVGFDVSKPSLPVFENSGL
GSKYSTEIANGVYIDENDFDDDLLLENDIDQKPIPWSSSPIEHTKLTKSMLSSEKRSKNH
LSKIYEDHTSEKGASSVISSNITRQGIKRSRTLPWAVDPYRYGDPDPKRTSTSADISQHT
VSNDSSNKLSNGRSSSLDSLAKKRMSKSKSTPQISKKFSVPLNSASKSPIGSSLFKTSDS
RKKSVPSIFLSDEQKRILDMVVEQQHSIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRV
AVTASTGLAACNIGGVTLHSFAGVGLARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVS
MVDAELMDKLEEVARVIRKDSKPFGGIQLVLTGDFFQLPPVPENGKESKFCFESQTWKSA
LDFTIGLTHVFRQKDEEFVKMLNELRLGKLSDESVRKFKVLNRTIEYEDGLLPTELFPTR
YEVERSNDMRMQQINQNPVTFTAIDSGTVRDKEFRDRLLQGCMAPATLVLKVNAQVMLIK
NIDDQLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEYDSLDISPFDLPDVKQKKYKL
IAMRKASSTAIKWPLVRFKLPNGGERTIVVQRETWNIELPNGEVQASRSQIPLILAYAIS
IHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQEGLQVLNFSPAKVMAHPKVVQFYKQ
LASVNGLPIRNENKAPVQMRGVKNK
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgttttcgtgccaatctctttataaatttagtcactcttttaggaaacgtatccccgtc
atgtttcaaagagctcagcagaaaagcagcttgcttcatacacaaaacgagtcatcgcat
caaccctccttgaacaaattgggcggtttttcgtccgcttctttaaacttcaattcctct
cgctcctctactaatgatgatcagcaaacattttctagccagtctgataaccttccgtca
tctccaataaccctaccagccaaaagaggtcgttctgctgctagcttaaaacaacttgat
aacaccgtgggattcgatgtttcgaaaccctcactgcccgtttttgaaaattctggcttg
ggtagtaaatactccactgaaatagcgaatggcgtctatattgatgaaaatgactttgat
gatgatctacttttagaaaacgatattgaccaaaaaccaattccttggtcttcatcccct
atcgagcatactaagttaactaaatcaatgctctcgagcgaaaagcggtcaaaaaatcat
ctctcaaaaatttacgaagaccatacttctgaaaaaggcgcaagtagcgtaatatctagt
aatattacgaggcagggaataaaacgctcacgaacccttccttgggcagtggatccttac
agatatggagatcctgatcctaaaagaaccagcacttcagctgatatcagtcaacacact
gtatctaatgattcttcaaataagcttagcaatggacgaagcagttctttggatagtctg
gctaaaaaacgcatgagtaaatctaagtctaccccacagatatctaaaaaattttctgtt
cctttaaactctgcttccaaatcgccaataggatcttctttgtttaagacaagtgattct
cgtaaaaaatctgtccctagcatattcctttccgatgagcaaaaaagaattttagacatg
gttgttgagcaacaacacagtatattttttacgggctctgctggaacaggtaaatctgtt
ctcctccgaaaaataattgaagtcctaaaatctaaatatagaaagcaatctgacagagtt
gctgttaccgcttctacaggcttggcagcctgtaatatcggcggtgtaacacttcactcc
tttgctggggtaggccttgctcgtgaatctgtcgacctcctggtatctaaaataaagaaa
aataagaagtgtgttaatcgttggttgcgcaccagagttttgatcattgatgaagtttct
atggtcgatgctgaattaatggacaagttagaagaggttgcgcgtgttattcgcaaagat
agtaagccatttggtggaattcagttggttttaactggggatttttttcagttacctcct
gttccagaaaatgggaaagaatcgaaattctgtttcgaatctcagacatggaaaagcgca
cttgattttacaataggattgactcacgtttttcggcaaaaggatgaggaatttgtcaaa
atgcttaatgaattgcgcctcgggaaattatctgatgaatcggttagaaaattcaaagtt
cttaatagaacgattgaatatgaagatgggcttcttccgacagagttatttcccacacgt
tatgaggttgagcgttcgaacgatatgcgtatgcaacaaattaatcaaaatcctgtcacg
tttaccgctattgactcgggtactgttcgagataaagaatttcgtgaccgattactgcaa
gggtgcatggctcctgccactttagtgttaaaggtaaatgctcaggtaatgcttataaag
aatatagatgatcagttagtaaatggatctcttggaaaagttataggtttcatagatgat
gagacctatcaaatggaaaaaaaggatgctgaaatgcagggaagaaatgcttttgaatat
gatagtttagacatttcaccctttgatcttccagacgttaagcaaaagaaatataaattg
attgcaatgcgtaaagcttcatccacggcaataaaatggccattagttcgttttaaactt
ccaaatggaggtgaacgtacaattgttgtacaacgggaaacttggaatattgagcttccc
aatggtgaggttcaagcttctagaagccaaattcctcttattttggcttatgcgatatct
attcacaaggcacaaggacagactttggatcgagtcaaggttgatttgggtcgtgttttt
gagaaagggcaagcgtatgttgccttatctcgtgcaactactcaagaaggtctccaggtt
cttaatttttcgcctgcgaaggtgatggcacaccccaaagtcgtgcaattctataaacaa
ctggcttctgttaatggtttgccgatacgtaatgaaaacaaggctccagttcaaatgagg
ggagtcaaaaataagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (91)   

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