KEGG   Strongylocentrotus purpuratus (purple sea urchin): 589616
Entry
589616            CDS       T01019                                 
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03022  Basal transcription factors
spu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    589616
  09124 Replication and repair
   03420 Nucleotide excision repair
    589616
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spu03021]
    589616
   03400 DNA repair and recombination proteins [BR:spu03400]
    589616
Transcription machinery [BR:spu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     589616
DNA repair and recombination proteins [BR:spu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     589616
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA VWA_3
Other DBs
NCBI-GeneID: 589616
NCBI-ProteinID: XP_794347
UniProt: A0A7M7REF6
Position
Unknown
AA seq 409 aa
MADDEPEKGYTWEGDYERTWEALQEDEEGSLQATVDDIIQRAKRRRLEDRPSNVRLGMMR
HLFILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNMRAEKLTE
LGGNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMGSLTTCDP
GNIHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELLMEHTIPP
PARVNTEPSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFCPQCQSKYC
ELPVECRVCGLTLVSAPHLARSFHHLFPLDRFEEFKREDHDHPDSLFCQGCQSHIRDQTA
YRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQSQHRQTNGSHILHS
NT seq 1230 nt   +upstreamnt  +downstreamnt
atggcagatgacgaacctgagaagggctatacgtgggaaggagattatgaaaggacctgg
gaggctctccaagaggatgaagaaggctcactccaggccactgtggatgatatcatccag
agagcaaagagaagaagattggaggatcgacccagcaatgtcaggcttggcatgatgcgg
catctgttcatcctgttggactgttcacgttcgatggaagatcaggacctcaaacccaac
agactggcttgctgtaccaagttgcttgaacattttatcgaggaatactttgatcagaac
ccaattagccaggttgggatcataacatccagtaacatgagagcagagaaattaactgaa
cttggaggtaatcctcagagacatatcacagctttggagaagtgtaatgataaaccttgt
gtgaaagagccttctttacagaatgcattggaactggcagctgcaactcttagacacatg
cctggccatgcgagtcgagagattcttgtaatcatggggagtttgactacgtgtgatcca
ggcaacatccatgatacaatacaggccatgaaagaccatagcatacgctgttgtgtcatc
ggtctagcagccgacgtgagagtgtgtcgtaagctagctacagtcactcatggtacatat
ggagtgattcttgatgagacacatttcaaagaactcttgatggaacacacaatacctccc
cctgccagggtgaatacagaaccatcaccaattagaatgggttttccacagcatgtgata
cacactgacaaaagcaaagtcagtgcaccatcaatgtgtatgtgtcacctggatggtaag
aactccgaggggtttggaactggtggctacttctgccctcaatgtcagagcaagtactgt
gagctaccggtcgaatgcagagtatgtggtctgacactcgtctcggctccacaccttgcc
cgttccttccatcatctcttcccgctcgacaggtttgaggaattcaagagagaagaccat
gatcatccagattctttattctgtcaaggatgccaatctcacatcagagaccaaacggca
tatagatgtcccaagtgcagcaacgtattctgtctcgactgtgagctgttcatacaagaa
tctcttcattcctgccctggctgtgcaagcaccaggccatctcaatcacaacaccgtcaa
accaatgggagccacattctgcatagctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (52)   

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