KEGG   Sus scrofa (pig): 100037295
Entry
100037295         CDS       T01009                                 
Symbol
KDM5C
Name
(RefSeq) lysine-specific demethylase 5C
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ssc01009]
    100037295 (KDM5C)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssc03036]
    100037295 (KDM5C)
Enzymes [BR:ssc01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     100037295 (KDM5C)
Protein phosphatases and associated proteins [BR:ssc01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     100037295 (KDM5C)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    100037295 (KDM5C)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel zf-C5HC2 JmjN PHD ARID ASH2L-like_WH
Other DBs
NCBI-GeneID: 100037295
NCBI-ProteinID: NP_001090902
Ensembl: ENSSSCG00000012322
Vega: OTTSUSG00000004570
UniProt: A1YVX4
Position
X:complement(45968812..46003215)
AA seq 1516 aa
MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEV
DNFRFTPRIQRLNELEIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV
YPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPE
PTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEESGGDV
KVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLL
CDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMA
DSFKADYSNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRH
LTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSY
SINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGV
PVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCV
FSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLP
DDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLH
KLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSE
AEACVSRALGLVSGQEAGPHRVAGLQMTLAELRAFLDQMNNLPCAMHQIGDVKGILEQVE
AYQAEAREALASLPSSPGLLQSLLERGRQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPS
ARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPAT
LEAIIHEAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDL
PVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEK
ELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASPNTS
SSATSICVCGQVPAGVGALQCDLCQDWFHGRCVSVPRLLSSPRPSPTSSPLLAWWEWDTK
FLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQALAFEDV
TALLGRLAELRQRLQAEPRPEEPPTYPSTPAFDPLREGSGKDMPKVQGLLENGDSVTSPE
KVAPGEGSDLELLSSLLPQLTGPVLELPEATRAPLEELMLEGDLLEVTLDENHSIWQLLQ
AGKPPDLARIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRS
SWPEAEEAHEEEELEEETGGEGPPQPLPATGSPSTQENQNGLEPALGASSGSSVPFSTLT
PRLHMSCPQQPPQQQL
NT seq 4551 nt   +upstreamnt  +downstreamnt
atggagccggggtcagacgacttcctaccgccgccggagtgcccagtgttcgagcctagc
tgggcggagttccgagaccctctcggctacatcgcgaaaatcaggcccatcgccgagaag
tcgggcatttgcaagatccgcccacccgcggactggcagccaccgtttgctgtagaagtg
gacaacttcaggtttactccccgaatccagagactgaatgaactagagatcgtggtggaa
gaaggtggctatgaagccatctgcaaggaccgtcggtgggcccgggtggcccagcgcctc
aactacccaccaggcaagaacattggctctttgctacgctctcactatgaacgcattgtt
tacccctatgagatgtaccagtctggagccaacctggtgcagtgcaacacacgtccattt
gataatgaagagaaggacaaggaatataaaccccacagtatcccccttcgacagtctgta
caaccctccaagttcaacagttatggccggcgagccaagagactgcagcctgatccggaa
cccacagaggaagacattgaaaagaaccctgaactgaagaagcttcagatctatggggca
ggccccaagatgatgggcctgggcctcatggccaaggataagactctgcggaagaaagat
aaggaagggcctgagtgccccccaacagtagtggtgaaggaggagtcaggcggggatgtg
aaggtggagtcaacttcacccaagaccttcctggagagcaaggaggagctgagtcacagc
ccagagccctgcaccaagatgaccatgaggctgcggaggaaccacagcaatgcccagttt
attgagtcatatgtatgccggatgtgttcccgaggggatgaggacgacaagctcctgctg
tgtgatggctgtgatgacaactaccacatcttctgcttgctgcctcctttgcctgagatt
cccaagggtgtttggcggtgcccaaagtgtgtcatggcggagtgtaagcgcccccccgaa
gcctttggctttgagcaggctacccgggaatacactctgcagagctttggcgaaatggct
gactcctttaaagccgattactccaacatgcccgtacacatggtgcccacagaactcgtg
gagaaggaattctggcggctggtgaatagcattgaggaagatgtgactgttgagtatggg
gctgacatccattccaaagaatttggtagtggtttccctgtcagtgacagtaagcggcac
ctaacccctgaggaggaggagtatgctacaagtggttggaacctgaatgtgatgccagtg
ttggagcagtctgtactgtgccacatcaatgcagatatctctggcatgaaggtgccctgg
ctctatgtaggcatggtcttctcagccttttgctggcatattgaggatcactggagttac
tccattaactacctccattggggtgagccgaagacctggtatggggtaccctcacttgca
gcagaacatttggaagaggtgatgaagaagctgacacctgagctctttgatagccagcct
gatcttctgcaccaacttgtcaccctcatgaatcccaacaccctcatgtcccatggtgtg
ccggttgtccgcacaaaccagtgtgcaggagaattcgtcattacctttccccgagcttac
cacagtggcttcaaccaaggctacaactttgccgaggctgtcaacttttgcactgccgac
tggctgccagctgggcgccagtgcattgagcactaccgccggcttcgaagatattgcgtc
ttctcccatgaggagctcatttgcaagatggctgcctgtccagagaagctagacctgaac
ctggcagcagctgtacataaggaaatgttcatcatggtgcaggaggagcggcgtctacga
aaggccctgctagagaagggcatcacggaagctgagcgagaggctttcgagctgctcccg
gatgatgagcgccaatgcatcaagtgcaagaccacatgctttctgtcagccctagcctgc
tatgactgcccagacggccttgtctgcctttcccacatcaatgacctctgcaagtgctcc
agtagccggcagtacctgcggtatcggtacaccttggatgagctccctgccatgctccat
aagctgaaggtccgggctgagtcctttgacacctgggccaacaaagtgcgagtggccctg
gaggtggaggatgggcggaagcgcagtcttgaagagctgagggcactagagtctgaggcc
cgtgagaggaggtttcctaacagtgagctgctgcaacgactcaagaactgcctgagtgag
gcagaagcttgtgtgtcccgggctctggggctggtcagcggccaggaagctggcccccac
agggtggctggtctacagatgaccctggctgagctccgggcctttctggaccagatgaac
aacctgccttgtgccatgcaccagattggggatgtcaagggtattctggaacaggtggaa
gcctatcaggctgaggcccgtgaggccctggcctcactgccctccagtccagggctcctg
cagtccctgctggagagggggcggcagctgggggtggaggtacctgaggcccagcagctg
cagcggcaggtggaacaggcacgatggctggatgaggtgaaacgcacgctggctccctca
gcccgaaggggcaccctggctgtcatgcggggactgttggtcgcgggtgccagtgtagcc
cctagtcctgctgtggacaaggcccaagccgaactgcaggaactgctgaccattgctgaa
cgctgggaggagaaggcccacctctgcctggaggccaggcagaagcatccaccagccacg
cttgaggccataattcatgaggcagaaaacatccctgttcacctgcccaacatccaggct
ctcaaggaggcccttgctaaggcccgggcctggattgctgatgtggacgagatccagaat
ggtgatcattacccctgcctggatgacttggagggcctggtggctgtgggccgggaccta
cccgtggggttggaggagctgagacagctcgagctgcaggtactgacagcgcactcctgg
agggagaaggcctccaagaccttcctcaagaagaattcttgctacactctgctggaggtg
ctctgcccgtgtgcagacgccggctcagacagcaccaagcgcagccggtggatggagaag
gagctggggttgtacaaatctgacacagagctgctggggctgtctgcgcaggacctcagg
gacccaggctctgtgatcgtggccttcaaggagggggagcagaaggagaaggagggaatc
ctgcagctgcgtcgcaccaactctgccaagcccagtccgttggcatcaccgaacacatct
tcctctgcaacctccatctgtgtgtgtgggcaggtgccagccggggtgggagctctgcag
tgtgacctgtgtcaggactggttccatgggcgatgtgtgtcggtaccccgcctcctcagt
tccccaaggcccagtcccacctcatccccactgctggcctggtgggagtgggacaccaaa
ttcttgtgtccgctgtgcatgcgctcacggcgcccgcgcctggagaccatcctggcactg
ctggtagcactgcagagactgcctgtgcggctgcctgagggcgaggccctgcaatgcctc
acagagagggccatcagctggcaaggtcgtgccaggcaggctctggcctttgaggatgtg
actgctctgttgggacggctggccgagcttcgccagcggctgcaggctgaacccaggccc
gaggagccccctacctacccttcaacccctgcctttgaccctctcagagaaggcagtggc
aaggatatgcctaaggtgcaggggttgctggagaacggagacagtgtgaccagtcctgag
aaggtagccccgggggagggctcagacctggagctgctgtcctcgctgttgccccagttg
actggccctgtgttggagctgcctgaggcaacccgtgcccccctcgaggagctcatgtta
gagggggatctgcttgaggtgaccctggatgagaaccacagcatctggcagctgctacaa
gctgggaagcctccagatctagcacggatccgcacacttctggagctggagaaggcagag
cgccatgggagccgagctcggggccgggcgctggagaggcggcggcggcggaaggtggat
cggggtggggagggcgatgacccagcccgagaggagctagagccaaagagggtacggagc
tcatggccagaggccgaggaggcccatgaggaggaggagctggaggaggagactgggggt
gaggggcccccccaacccctgcccgccaccggcagccccagcacccaggagaaccagaat
ggcttggagccagcgctaggggccagttcaggctcctctgtccctttctccactttgact
ccgcggctgcacatgtcctgcccacagcagccgcctcagcaacagttgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (14)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (12)   
DNA sequence (18)   
   RefSeq(nuc) (12)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (72)   

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