KEGG   Sus scrofa (pig): 100037999
Entry
100037999         CDS       T01009                                 
Symbol
TPM1
Name
(RefSeq) tropomyosin alpha-1 chain
  KO
K10373  tropomyosin 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04260  Cardiac muscle contraction
ssc04261  Adrenergic signaling in cardiomyocytes
ssc04814  Motor proteins
ssc04820  Cytoskeleton in muscle cells
ssc05206  MicroRNAs in cancer
ssc05410  Hypertrophic cardiomyopathy
ssc05414  Dilated cardiomyopathy
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09140 Cellular Processes
  09142 Cell motility
   04814 Motor proteins
    100037999 (TPM1)
   04820 Cytoskeleton in muscle cells
    100037999 (TPM1)
 09150 Organismal Systems
  09153 Circulatory system
   04260 Cardiac muscle contraction
    100037999 (TPM1)
   04261 Adrenergic signaling in cardiomyocytes
    100037999 (TPM1)
 09160 Human Diseases
  09161 Cancer: overview
   05206 MicroRNAs in cancer
    100037999 (TPM1)
  09166 Cardiovascular disease
   05410 Hypertrophic cardiomyopathy
    100037999 (TPM1)
   05414 Dilated cardiomyopathy
    100037999 (TPM1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ssc04812]
    100037999 (TPM1)
   04147 Exosome [BR:ssc04147]
    100037999 (TPM1)
Cytoskeleton proteins [BR:ssc04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Tropomyosins
     100037999 (TPM1)
Exosome [BR:ssc04147]
 Exosomal proteins
  Exosomal proteins of microglial cells
   100037999 (TPM1)
SSDB
Motif
Pfam: Tropomyosin CLZ Laminin_II Crescentin DUF745 TMF_DNA_bd DUF3450 CENP-F_leu_zip Lebercilin ERM_helical DUF1664 Laminin_I DUF16 ATG16 AAA_13 DUF4200
Other DBs
NCBI-GeneID: 100037999
NCBI-ProteinID: NP_001090952
Ensembl: ENSSSCG00000004570
UniProt: P42639
Structure
Position
1:complement(108986981..109016090)
AA seq 284 aa
MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY
SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA
DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE
ERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE
FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI
NT seq 855 nt   +upstreamnt  +downstreamnt
atggacgccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggat
cgagcggagcaggcggaggccgataagaaggcggcagaggacaggagcaagcggctggaa
gatgagctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatat
tccgaggctcccaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgat
gctgaagccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggac
cgtgcccaggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagca
gatgagagtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaa
atggaaattcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgc
aagtatgaagaggtggcccgtaagctggtcatcattgagagtgacctggaacgtgccgag
gagcgggctgaactctcagaaggcaaatgtgccgagcttgaagaagagttgaaaactgtg
acgaacaacttgaagtcactggaggctcaggctgagaagtactcacagaaggaagacaaa
tatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaaactcgggccgag
tttgcagagaggtcagtaactaaattggagaaaagcattgatgacttagaagacgagctg
tacgctcagaaactgaagtacaaagccatcagcgaggagctggaccacgctctcaacgat
atgacttccatataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (7)   
   KEGG PATHWAY (7)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1304)   
   KEGG ORTHOLOGY (1)   
   RefGene (1299)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (26)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (24)   
DNA sequence (52)   
   RefSeq(nuc) (24)   
   GenBank (14)   
   EMBL (14)   
3D Structure (7)   
   PDB (7)   
Protein domain (16)   
   Pfam (16)   
All databases (1416)   

Download RDF
DBGET integrated database retrieval system