KEGG   Sus scrofa (pig): 100101927
Entry
100101927         CDS       T01009                                 
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
  KO
K12647  interferon-induced helicase C domain-containing protein 1 [EC:3.6.4.13]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04622  RIG-I-like receptor signaling pathway
ssc05161  Hepatitis B
ssc05162  Measles
ssc05164  Influenza A
ssc05168  Herpes simplex virus 1 infection
ssc05171  Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    100101927 (IFIH1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05161 Hepatitis B
    100101927 (IFIH1)
   05171 Coronavirus disease - COVID-19
    100101927 (IFIH1)
   05164 Influenza A
    100101927 (IFIH1)
   05162 Measles
    100101927 (IFIH1)
   05168 Herpes simplex virus 1 infection
    100101927 (IFIH1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ssc04054]
    100101927 (IFIH1)
Pattern recognition receptors [BR:ssc04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   100101927 (IFIH1)
SSDB
Motif
Pfam: CARD_2 RIG-I_C-RD RIG-I_C DEAD Helicase_C ResIII CARD SWI2_SNF2 DUF3638 DUF2457
Other DBs
NCBI-GeneID: 100101927
NCBI-ProteinID: NP_001093664
UniProt: A7LCX1 A0A8D1F3D8
Structure
Position
15:complement(68930998..68985145)
AA seq 1023 aa
MSSDGYSADQNFCYLISCFRARVKRYIQVEPVLDYLTFLPAEVKEQIQRAVATTGNINAA
ELLLNTLEKGVWPPGWTRMFVQALRETGNSLAARYVNPDLTDLPSPSFESSHDECLQLLN
LLQPTVVDKLLVTDVLDKCVEEQLLTGEDRNRVSAAENDGNESGVRELLKRIVQKENWFS
TFLTVLRQTGNDALARELTGTDCCESNAESDDLLGENGPEVQEPLLLATDQPSLDVSDIE
KSSLESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEETVAQRAS
PEPELHLRPYQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKEASEPGKVIV
LVNKVPLVEQLFRKEFEPFLKKWYRVTRLSGDTQLKITFPEVVKSCDVIISTAQILENSL
LNSEEGEDPGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKEEKPVIPL
PQILGLTASPGVGGAKKQAKAEEHILKICANLDAFTIKTVKKNINQLKDQIKEPCKKFVI
ADDTREDLFKDRLLEIMTNIQTFCQISPMSDFGTQPYEQWLIQMEKKAARDGNRKDRVCA
EHLKKYNEALQINDTIRRIDAYNHLKTFYNDEKEKKFEVLEDDSDDNGDDSDNDEDENDE
KKPSKLDESDIFLMTLFLRNKKILKKLAENPEYENEKLTKLRNTIMEHFTRTEESARGII
FTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPMTQNEQREVISKFRTGKI
NLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAQSGSGVIER
ETVNDFREKMMYKAIDRVQNMKPEEYAHKILELQMQSIMEKKMKIKRSIAKQCKDNPSLI
SFLCKNCSVLACSGEDIHIIEKMHHVNMTPEFKNLYIVRGNKALQTKFADYQTNGEIICK
KCGQAWGTMMVHKGLDLPCLKIKNYVVAFKNNLFKKQYKKWVELPITFPDLNYSEYCLSS
DED
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgtcgtcggatgggtattccgcggaccagaatttctgctatctcatctcgtgtttcagg
gccagagtgaaaaggtacattcaggtggagccggtattggactacttgacctttctgcct
gcagaggtgaaggagcagattcagagggcggtcgccaccactgggaacataaacgcagct
gaactgcttctgaacactttggagaagggggtctggccccccggctggactaggatgttt
gtgcaggctctccgggaaacaggcaactccttagcggcccgctacgtgaaccccgatctc
accgacttgccctctccatcctttgagagctctcatgatgagtgtctccaactgctgaac
cttcttcagcctacagtggtggacaagcttctggttaccgatgtcttggataaatgtgtg
gaggagcaactgttgacaggtgaagacagaaatcgggtttctgctgcagaaaatgatgga
aatgaatcaggagtaagggagctcctgaaaaggattgtgcagaaagaaaactggttttct
acatttctgacagttctgagacaaacaggaaatgatgcacttgcccgcgaattaacaggc
accgattgctgtgaaagcaatgcagaatctgacgatttattaggagaaaatggtcctgaa
gttcaagagcctctccttttagccacagatcagccaagtctggacgtctcggacatagag
aaaagttcactggaatcatcttttgcagattcttctgtagtttcagaatcagacacaagt
ttggcagaaggaagtgtcagctgcttagatgaaagtcttggacataacagcaacatgggc
agtgattcaggcaccatgggaagtgattcagatgaagagactgtggctcaaagagcatcc
cctgagccagagctgcatctcaggccttaccaactggaagtggcccagccagctctggag
ggaaagaatatcattatatgcctccctaccgggagtgggaaaaccagagtggccgtgtac
attgccaaggatcacttggacaagaagaaagaagcttctgaacctggaaaagttatagtc
cttgtcaataaggtaccattagttgaacagctcttccgcaaagagttcgaaccatttttg
aagaaatggtatcgtgttactagattaagtggtgatacccaattgaaaataacatttcca
gaagttgtcaagtcttgtgatgttattatcagtacagctcaaatccttgaaaactccctt
ttaaactcagaagaaggagaagaccctggtgtacagctgtcagacttttctctcatcatc
attgacgaatgccatcacaccaacaaagaagcagtctataataacatcatgaggcgttat
ttgaaacagaaattgaaaaacaataaactcaagaaagaagagaaaccagtgattccctta
cctcagatattgggactaacagcctcaccaggtgttgggggagccaaaaagcaagccaaa
gctgaagaacatattttaaaaatatgtgccaatcttgatgcatttaccattaaaactgtg
aaaaaaaatattaatcaacttaaagaccaaataaaggagccatgcaaaaagtttgtaatc
gcagatgacaccagagaagatctgtttaaagatagacttctagaaataatgacaaacatt
caaactttttgccaaattagtcctatgtcggattttggaactcaaccctatgaacaatgg
ctcattcaaatggaaaaaaaagctgcaagagacggaaatcgcaaagatcgtgtttgtgca
gaacatttgaaaaagtacaatgaggctctacaaattaatgatacaatccgaaggattgat
gcctataatcaccttaaaactttctacaatgatgagaaagaaaagaagtttgaagtcctg
gaagatgacagtgatgacaatggagatgatagtgataacgatgaagatgagaatgatgaa
aagaaaccttcaaaactggatgaatcagatatatttctcatgactttatttttgagaaac
aagaaaatattgaagaagctggctgaaaacccagaatatgaaaatgaaaagctgaccaaa
ttaagaaacaccataatggaacattttacaaggactgaggaatcagcacgaggaataatt
ttcacaaaaacacgacagagtgcatatgccctttcccagtggattactgacaataaaaaa
tttgcagaagtaggagtcaaagcccaccatctgattggagctggacacagcagtgagttc
aagcccatgacacagaatgaacaaagagaagtcattagtaaatttcgcacgggaaaaata
aatctgcttatcgctaccacggtggcagaagaaggtctggatattaaagagtgtaatatc
gttattcgatatggtctcgtcactaatgaaatagccatggtccaggcccgtggtcgagcc
agagctgatgagagcacctacgtcctggttgcccaaagtggctctggagttattgaacgt
gagaccgttaatgatttccgagagaaaatgatgtataaagctatagaccgtgttcaaaat
atgaaaccagaagagtatgctcataagattttggaattacagatgcaaagtataatggaa
aagaaaatgaaaatcaagagaagtattgcaaagcaatgcaaggacaacccatcattaata
agttttctatgcaaaaactgcagtgtgctagcctgctctggagaagatatccacataatt
gagaagatgcaccatgtcaacatgacaccagagttcaagaacctgtatattgtgagagga
aacaaggcactgcagacgaagtttgctgactatcaaacaaatggcgagataatctgcaaa
aaatgtggccaagcttggggaacgatgatggtgcacaaaggcttagatttgccttgtctc
aaaataaagaattatgtagtggctttcaaaaataatttatttaagaaacaatacaaaaag
tgggtagaattacccatcacatttcccgatcttaactattcagaatattgtttgtctagt
gatgaggactga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
3D Structure (1)   
   PDB (1)   
Protein domain (10)   
   Pfam (10)   
All databases (46)   

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