KEGG   Sus scrofa (pig): 100152112
Entry
100152112         CDS       T01009                                 
Symbol
ABCA1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
  KO
K05641  ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ssc  Sus scrofa (pig)
Pathway
ssc02010  ABC transporters
ssc04148  Efferocytosis
ssc04975  Fat digestion and absorption
ssc04979  Cholesterol metabolism
ssc05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    100152112 (ABCA1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    100152112 (ABCA1)
 09150 Organismal Systems
  09154 Digestive system
   04975 Fat digestion and absorption
    100152112 (ABCA1)
   04979 Cholesterol metabolism
    100152112 (ABCA1)
 09160 Human Diseases
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    100152112 (ABCA1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ssc02000]
    100152112 (ABCA1)
Transporters [BR:ssc02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA1, 2, 3, 4, 7, 12, 13 subgroups
    100152112 (ABCA1)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 DUF4162 AAA_23 Mst1_SARAH
Other DBs
NCBI-GeneID: 100152112
NCBI-ProteinID: NP_001304009
Ensembl: ENSSSCG00000005423 ENSSSCG00000026173
Vega: OTTSUSG00000002447
UniProt: A0A4X1VEX4 A0A0A0R2Y4
Position
1:complement(246144277..246278492)
AA seq 2261 aa
MAYWTQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSQRDT
SMKDIHKVLRTLYQMERSRSGLKLRDFLADNETFSEFLHHNLSLPRPTVDKMLGADVRLR
KVFLQGYQLHLTNLCNGSKLEEVIQLGDQEVSRLCSLPREKLDAAEQVLRSNMDILKPIL
TQLNSTSPFPSKELAEATKALLDSLGNLAQELFSMKSWSDMRQEVMFLTNANSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDMEGMWQELS
PKIWTFMESSSEMDLVRTLLNSRGSDHFWEKRLEGLDWTAKDIVAFLAKHPEDVQSMNGS
TYTWREAFNETNQAVQTISRFMECVNLNKIEPVATEARLINKSMELLDERKFWAGIVFPG
ITPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFTYLQDVV
EQAIIRVLTGVEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSLKIFAS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPGSSQKGPSEICMEEEPTHLKLGVS
IQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYPKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVAEARLVEDI
GHELTYVLPYEAAREGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRVFGDKQSCLRPFTEDDAADPNDSDVDPESRETDLLSGMDGKGSYQVK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIILPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDVGTQELLNALTRKPGFGTRCMEGNPIPDKPCLVGEKEWITAP
VPQTIRDLFQNGNWTMANPSPACQCSSDKIKKMLPVCPLGAGGLPPPQRKQNTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNYQSLPPSEEVNDAIKQMKK
HLKVAKDSSADRFLSNLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTGGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVLLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLQPVQEFFG
HAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSVLSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq 6786 nt   +upstreamnt  +downstreamnt
atggcttattggactcaactgaggttactgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctatttatcttcctgatcctgatc
tctgtgcggctgagctacccaccctatgaacaacatgaatgtcactttccaaacaaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgcaatgccaataacccc
tgcttccgttatccgactcctggtgaggctcctggggttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctcggcggcttcttttgtatagccagagagacacc
agcatgaaggacatacacaaagttctgaggacattataccagatggagagatccagatca
ggcttgaagcttcgggacttcctggcagacaatgaaaccttctctgaattcctgcatcac
aacctctctctgccaaggcctactgtggacaagatgctgggggctgatgtcagactccgc
aaggtatttttgcaaggctaccagttacatttgaccaacctgtgcaatggatcaaaatta
gaagaggtgattcagcttggtgaccaagaagtctccaggctttgcagcctgccaagggaa
aagctggatgcagcagagcaagtactgcgttccaacatggacatcctgaagccgatcctg
acgcaactaaactccacatctcccttcccgagcaaggaactggctgaagccacgaaagct
ttgctggatagtcttgggaatctggcccaagagctattcagcatgaagagctggagtgac
atgcggcaggaggttatgtttctgaccaacgcgaatagctctagctcttccacccagatc
taccaggcagtgtcccgcatcgtctgtggccatcccgagggcgggggcctgaagatcaag
tcccttaactggtatgaggacaacaactacaaagccctctttggaggcaatggcaccgag
gatgatgctggcactttctatgacaattccacaactccttattgcaatgatttgatgaag
aatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcctcttcttgtt
ggaaagatcctatatacaccggacactccagccacaaggcaggttatggccgaggtgaat
aaaaccttccaagaactggctgtatttcatgatatggaaggcatgtggcaagagctcagc
cccaagatctggaccttcatggagagcagctcagaaatggaccttgtccggacgctgttg
aacagcagaggcagtgaccacttttgggaaaagcgattggaaggcttagattggacagcc
aaagatatcgtggcttttctggctaagcacccagaggatgtccagtccatgaatggctcc
acgtacacctggagagaagccttcaacgagaccaaccaggcagtccagaccatctctcgc
ttcatggagtgtgtgaacctgaacaagatagaaccagtcgcaacagaggctcgactcatc
aacaagtctatggagctgctggatgagcggaagttctgggctgggatcgtgtttcctgga
atcaccccaggcagtgtcgagctgccccatcacgtcaagtataagatccggatggacatc
gacaatgtggagaggacgaacaagatcaaggatgggtactgggaccctggtcctcgggct
gacccctttgaggatatgcggtacgtctgggggggcttcacctacttgcaggatgtggtg
gagcaggcaatcatcagagtgctgacgggcgtggagaagaaaactggtgtctacatgcag
cagatgccctacccctgttacgtcgatgacatcttcctgcgggtcatgagccggtcaatg
cccctcttcatgaccctggcctggatttactcggtggctgtgatcatcaagggcatcgtg
tatgagaaggaggcgcggctgaaggagactatgcgcatcatgggcctggacaatggcatc
ctctggtttagctggttcatcagtagcctcatccctctgcttgtgagcgccggcctgctg
gtggtcatcctgaaattgggaaacctgctgccctacagcgaccccagcgtggtgttcgtc
tttctgtccgtgttcgccgtggtgaccatcctgcagtgcttcctgatcagcacgctcttc
tccagagccaacctggcggcagcctgtgggggtatcatttacttcacgctctacctgccc
tacgtcctgtgtgtggcgtggcaagactacgtgggcttctctctcaagatctttgctagc
ctgctgtctcctgtggcttttgggtttggctgtgaatacttcgcccttttcgaggagcag
ggcatcggggtgcagtgggacaacctctttgagagccccgtggaggaagatggcttcaac
ctcaccacctcagtctccatgatgctctttgacaccttcctgtacggggtgatgacctgg
tacatcgaggctgtgtttcctggccaatatggaatccccagaccttggtatttcccttgc
actaagtcgtactggttcggtgaggagagtgatgagaagagccaccctggttccagccag
aagggaccatcagaaatctgcatggaggaggagcccacccacctgaagctgggtgtgtcc
attcagaacctgatgaaggtttaccgagatggcatgaaggtggccgtcgacggcctagcc
ctgaatttctatgaaggccagattacctccttcctgggccacaatggagccggaaagacc
accaccatgtcaatcctgacagggttgttccctcccacctcgggtactgcctacattctg
ggaaaagacattcgctccgagatgagcaccatccggcagaacctgggggtctgtccccag
cataacgtgctgtttgacatgctgactgttgaagagcacatctggttctatgcccgcctg
aaagggctctcggagaagcacgtgaaggccgagatggagcagatggccctggatgtcggc
ttgccacccagcaaactgaaaagcaaaacaagtcagctgtcaggaggaatgcagagaaag
ctgtctgtggccttggcctttgtcgggggatccaaggttgtcattctggatgagcccaca
gctggtgtggacccttactcccgcaggggaatttgggagctgctgctgaaatatcgacaa
ggccgcaccatcattctctccacacaccacatggatgaggcggacatcctgggggacagg
attgccatcatttcccatgggaagctgtgctgcgtgggctcctccctgttcctgaagaac
cagctggggacaggctactacctgaccctggtcaagaaggatgtggagtcctccctcagc
tcgtgcagaaatagcagtagcactgtgtcgtacccgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacactgaccatcgacgtc
tccgctatctccaacctcatcaggaagcatgtggccgaggcccggctggtggaagacatt
ggacatgagctgacctacgtgctgccctacgaagctgccagagagggagcctttgtggaa
ctcttccatgagattgacgaccggctctcagacctgggcatctccagttatggcatctca
gagaccaccctggaagaaatattcctcaaagtggctgaagagagtggggtggacgctgag
acctcagatggcaccctcccagcgagacgaaacagacgggtcttcggggacaagcagagc
tgtcttcgcccattcactgaagacgatgctgctgatccaaatgattccgacgtagaccca
gaatccagggaaacagacctgctcagcggtatggacggcaagggctcctaccaagtgaag
ggctggaaactcactcagcagcagtttgtggcccttttgtggaagaggctgctgattgcc
aggcggagtcggaagggattttttgctcagattatcctgccagctgtgtttgtctgcatt
gccctagtgttcagcttgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtacaacgaacagtacacatttgtcagtaatgatgcacctgaggacgtgggc
acccaggaactcttgaatgccctcaccagaaagcctggcttcgggacccggtgtatggaa
gggaacccaatcccagacaagccctgcttggtgggggagaaggaatggatcactgcccca
gttccccagaccatcagggacctcttccaaaatgggaactggacgatggcgaacccctcc
cctgcctgccagtgtagcagtgataaaatcaagaagatgctgccagtgtgtcccctgggg
gcaggggggctgcctcctccacagagaaaacagaacaccgcggacatccttcagaacctg
acgggaagaaacatttcggattacctggtgaagacctatgtgcagatcatagccaaaagc
ttaaagaacaagatctgggtgaatgagtttaggtatggtgggttttccctgggtgccagt
aattatcagtcacttcctccgagtgaagaagttaatgatgccatcaagcaaatgaagaaa
cacttgaaggtagccaaggacagctctgcagatcgatttctcagcaacttgggaaggttc
atgacaggactggacacgaaaaataacgtcaaggtgtggttcaataacaagggctggcat
gccatcagttctttcttgaatgtcatcaacaatgccattcttcgggccaacctgcagaag
ggagagaaccccagccagtatgggattactgctttcaatcaccccctgaacctcaccaag
cagcagctctcagaagtggctctgatgaccacatcggtggatgtcctcgtctccatctgt
gtcatctttgcgatgtccttcgtcccagccagctttgttgtgttcctgatccaggagcgg
gtcagcaaagccaagcacctgcaattcatcagcggagtgaagcctgtcatctactggctc
tccaactttgtctgggacatgtgcaactatgtggtccccgccacgctggtcattatcatc
tttatctgcttccagcagaagtcctatgtatcctccaccaacctgcctgtgctagcactt
ctccttctgctgtatgggtggtccatcacacctctcatgtaccccgcctccttcgtgttc
aagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggcatcaat
ggcagtgtggccacttttgtgctggagctcttcaccaacaacaagctgaataacatcaat
gatatcctgaagtctgtgttcttgatcttcccacatttttgcctgggacgggggctcatt
gacatggtgaaaaaccaggcaatggctgatgccttggaaaggtttggggagaatcgcttt
gtctcgcccctgtcttgggacttggtggggcgaaacctcttcgccatggccgtggaaggg
gtggtgttcttcctcatcacagtgctgattcagtacagattcttcatcagacccagacct
gtaaaggcaaagcttcctcctctgaatgatgaggatgaagatgtgaggcgggaaagacag
agaattcttgatggtggaggacagaatgatatcttggaaatcaaggagttgactaagata
tatagaaggaagaggaagcctgctgttgacaggatttgcgttggcattcctcctggcgag
tgctttggacttctgggtgttaatggggctggaaaatcatcaactttcaagatgttaact
ggcgataccactgttactggaggagatgcttttcttaacaaaaatagtatcttatcaaac
atccacgaagtacatcagaacatgggctattgccctcagtttgatgccatcacagagcta
ctgactggaagagaacatgtggagttctttgccctcttgagaggagtcccggagaaagaa
gttggcaaggttggtgagtgggcgattcggaaactgggcctcgtgaagtatggagagaaa
tatgctgggaactacagtggaggcaacaagcgcaagctctcaacagccatggctttgatc
ggtgggccccctgtggtctttctggatgaaccgaccacaggcatggatcccaaagcccgg
cgattcttgtggaattgtgccctaagtatcgtcaaggaaggaagatcagtattgcttaca
tctcatagtatggaagaatgtgaagctctttgcaccaggatggcaattatggtcaatggg
aggttcaggtgtcttggcagtgtccaacatctgaaaaataggtttggagatggttatacg
atagttgtacgaatagcagggtccaaccctgacctgcagccggtccaggagttctttgga
catgcctttccgggaagcgtcctgaaggagaagcaccggaacatgctgcagtaccagctt
ccctcgtccctgtcctccctggccaggatattcagcgtcctttcccagagcaaaaagcga
ctccacatagaagactactcagtttctcagacaacacttgaccaagtatttgtaaacttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacataaaaaccagaca
gtagtggatgttgctgttctcacatcttttctgcaggatgagaaagtgaaagaaagttac
gtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   OC (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (46)   

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