KEGG   Sus scrofa (pig): 100153958
Entry
100153958         CDS       T01009                                 
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03015  mRNA surveillance pathway
ssc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100153958 (PABPC1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100153958 (PABPC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssc03019]
    100153958 (PABPC1)
   03041 Spliceosome [BR:ssc03041]
    100153958 (PABPC1)
Messenger RNA biogenesis [BR:ssc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100153958 (PABPC1)
   mRNA cycle factors
    Stress granule specific factors
     100153958 (PABPC1)
Spliceosome [BR:ssc03041]
 Complex C
  Other components
   Complex C specific factors
    100153958 (PABPC1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_5 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 100153958
NCBI-ProteinID: XP_001927782
Ensembl: ENSSSCG00000006063
UniProt: A0A4X1TSV7
Position
4:36137644..36228075
AA seq 636 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq 1911 nt   +upstreamnt  +downstreamnt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttca
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat
ggatttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgaaaagtattcgttggacgatttaagtctcgtaaagaacgagaa
gccgaacttggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgacgagagtggaaaatccaaaggttttggatttgtaagctttgaaagg
catgaagatgcacagaaagccgtagatgaaatgaatggaaaggagctcaatggaaaacaa
atttacgtcggtcgagcccagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaaggtttcggttttgtttgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaatggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggcccacctcactaac
cagtatatgcagagaatggcaagtgtaagagctgtgcccaaccctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaacatgcccggtgctatccgcccagctgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtccacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcctgcagctgctgctgctgca
gctactcctgctgttcgcaccgttccacagtataaatatgctgcgggagttcgcaatcct
caacaacatcttaatgcccagccacaagttaccatgcaacagcctgctgttcatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgcccctcctcaagagcagaagcaa
atgttgggtgaacggctctttcctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagctgtactacaagctcaccaagctaaa
gaggctgcccagaaagcagttaacagtgccactggtgttccaactgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (13)   
   RefSeq(nuc) (1)   
   GenBank (6)   
   EMBL (6)   
Protein domain (7)   
   Pfam (7)   
All databases (74)   

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