KEGG   Sus scrofa (pig): 100154148
Entry
100154148         CDS       T01009                                 
Symbol
PSMC6
Name
(RefSeq) 26S protease regulatory subunit 10B
  KO
K03064  26S proteasome regulatory subunit T4
Organism
ssc  Sus scrofa (pig)
Pathway
ssc03050  Proteasome
ssc05010  Alzheimer disease
ssc05012  Parkinson disease
ssc05014  Amyotrophic lateral sclerosis
ssc05016  Huntington disease
ssc05017  Spinocerebellar ataxia
ssc05020  Prion disease
ssc05022  Pathways of neurodegeneration - multiple diseases
ssc05169  Epstein-Barr virus infection
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03050 Proteasome
    100154148 (PSMC6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    100154148 (PSMC6)
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    100154148 (PSMC6)
   05012 Parkinson disease
    100154148 (PSMC6)
   05014 Amyotrophic lateral sclerosis
    100154148 (PSMC6)
   05016 Huntington disease
    100154148 (PSMC6)
   05017 Spinocerebellar ataxia
    100154148 (PSMC6)
   05020 Prion disease
    100154148 (PSMC6)
   05022 Pathways of neurodegeneration - multiple diseases
    100154148 (PSMC6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:ssc03051]
    100154148 (PSMC6)
Proteasome [BR:ssc03051]
 Eukaryotic proteasome
  Regulatory particles
   PA700 (19S proteasome)
    ATPase subunits
     100154148 (PSMC6)
SSDB
Motif
Pfam: AAA Prot_ATP_ID_OB_C AAA_lid_3 AAA_16 AAA_2 AAA_22 AAA_5 PRS7_OB RuvB_N nSTAND3 Prot_ATP_ID_OB_N AAA_14 DUF815 AAA_18 AAA_11 AAA_7 AAA_33 TIP49 RNA_helicase AAA_3 TPR_MLP1_2 Mg_chelatase bpMoxR DUF5906 AAA_24 AAA_28 TsaE AAA_25 NACHT ATPase Occludin_ELL AAA_17 ATPase_2 Parvo_NS1 DUF4140 IstB_IS21 COG4_N Med4 AAA_19
Other DBs
NCBI-GeneID: 100154148
NCBI-ProteinID: XP_001928782
Ensembl: ENSSSCG00000005038
UniProt: A0A4X1W7V1 A0A8D0JAD6
Position
1:182329070..182354959
AA seq 403 aa
MAIPDIPYERRLLIMADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSEND
LKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLT
IMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIP
PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQ
PCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLD
PALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNV
CTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggccattcccgacatcccctatgagcgacggcttctcatcatggcggaccctagagat
aaggcgcttcaggactaccgcaagaagctgctggagcacaaggagatcgatggccgtctc
aaggagttaagggaacaattaaaagaacttaccaagcagtatgaaaagtctgaaaatgat
ctgaaggccctacaaagtgtcggacagattgtgggtgaagtacttaagcaattaactgaa
gaaaaattcattgttaaagctacaaatggaccaagatatgttgtgggttgtcgtcgacag
cttgacaaaagtaagctgaagccaggaacaagagttgctttggatatgactacactaact
atcatgagatatttgccaagagaagtggatccactggtttataacatgtctcatgaggac
cctgggaatgtttcttattctgagattggagggctatcagaacagattcgagaattaaga
gaggtaatagaattacctcttacaaacccagaattattccaacgtgtaggaataatacct
ccaaaaggctgtttgttatatggaccaccaggtacaggaaaaacactcttggcccgagct
gttgctagccagctggattgcaatttcttaaaggttgtgtctagttctattgtagacaag
tacattggtgaaagtgctcgtttgatcagagaaatgtttaattatgccagggaccatcag
ccatgtatcatttttatggatgaaatagatgctattggtggtcgtcggttttctgagggt
acttcagctgatagagagattcagagaactttaatggagttactaaatcaaatggatgga
tttgatactctacatagagttaaaatgatcatggctacaaacagaccagatacactggat
cctgctttgcttcgtccaggaagattagatagaaaaatacatattgatttaccaaatgaa
caagcaagattagatatattgaaaatccatgcaggtcccattacaaagcatggtgaaata
gattatgaagcaattgtgaagctttcagatggctttaatggagcagacctgagaaatgtt
tgtactgaagcaggtatgtttgcaattcgtgctgatcatgattttgtagtacaggaagac
ttcatgaaagcagtcagaaaagtggctgactctaagaagctagagtctaagttggactac
aagcctgtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (9)   
   KEGG PATHWAY (9)   
Genome (1)   
   KEGG GENOME (1)   
Gene (39)   
   KEGG ORTHOLOGY (1)   
   RefGene (34)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (13)   
   RefSeq(nuc) (1)   
   GenBank (6)   
   EMBL (6)   
Protein domain (39)   
   Pfam (39)   
All databases (106)   

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