KEGG   Sus scrofa (pig): 100156417
Entry
100156417         CDS       T01009                                 
Symbol
NISCH
Name
(RefSeq) nischarin isoform X2
  KO
K24095  nischarin
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:ssc04990]
    100156417 (NISCH)
Domain-containing proteins not elsewhere classified [BR:ssc04990]
 Phox homology (PX) domain-containing proteins
  Other PX domain-containing proteins
   100156417 (NISCH)
SSDB
Motif
Pfam: PX LRR_4 LRR_8 LRR_9
Other DBs
NCBI-GeneID: 100156417
NCBI-ProteinID: XP_001925389
Ensembl: ENSSSCG00000011442
UniProt: A0A4X1VP08 A0A5G2RKR1
Position
13:34595788..34630306
AA seq 1520 aa
MAAAARSFGPEPEAEPAKEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEK
LVAEKKIDKSLLPPKKIIGKNSRSLVEKREKDLEVYLQTLLATFPDVAPRVLAHFLHFHF
YEINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGH
ILDFTCRLKYLKVSGTEGPFGTSNIQEQHLPFDLSIFKSLHQVEISHCDAKHIRGLVASK
PTLATMSVCFSATSMKEVLVPEASEFDEWEPAGAALEGPVTAIIPTWQALTALDLSHNSI
SEIDESVKLIPKIEFLDLSHNGVLVVDNLQHLYNLVHLDLSYNKLSSLEGVHTKLGNIKT
LNLAGNLLGSLHGLHKLYSLVNLDLSNNRIEQMEEVRSIGSLPCLEHVALLNNPLSIIPD
YRTKVLAQFGERASEVCLDNTVTTEKELDTVEVLKAIQKAKEVKSKLSNTEKKVSEDSRL
SAATCIRPSGSPPTVAPTSASLPQPILSNQGIMFVQEEALASSLSSTDSLTPEDRPIARG
CSDSLESIPAGQALCDEIRDVPGAVGGASPEHSEPEVQVVPGSGQIIFLPFTCIGYTATN
QDFIQRLSTLIRQAIERQLPAWIEAANQREEGRGEQGEEEEEEEEEDVAENRYFEMGPPD
VEEEEEGGPGEEEEEEEEEEEEEGEEGEEERLALEWALGADEDFLLEHIRILKVLWCFLI
HVQGSIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTEFGFLMP
ELCLVLKVRHSENTLFIISDATNLHEFHADLRSCFAPQHMAMLCSPVLYGSHTSLQEFLR
QLLTFYKVAGGCQERSQGCFPVYLVYSDKRMVQTAAGDYSGNIEWASCTLCSAVRRSCCA
PSEAVKSAAIPYWLLLTPQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPT
RSCTQPRGAFADGHVLELLVGYRFVTAIFVLPHEKFHFLRIYNQLRASLQDLKTVVIAKT
PATGGRPQSPLADGQPTEGRASDDQHLQEALEEVPVPALAPAEAPGLAKIPAPAEASEPA
LVLPEAPTEASASEETPAEASAGASVPAPAEGTAQAEAPAQYPSERLIQSMSEENQIPSH
LPACPSLQHIASLQGSAVVEFFHNSIAEVENEELRHLLWSSVVFYQTPGLEVTACVLLST
KAVYFVLHDGLRRYFSEPLQDFWHQKNTDYNNSPFHISQCFVLKLSDLQTVNVGLFDQYF
RLTGSSPAQVVTCLTRDSYLTHCFLQHVMAVLSLLERTPSPEPVDKDFYSEFGNKTTGKV
ENYELIHSSRVKFTYPSEEEIGDLTFTVAQKMADPEKAPGLSILLYVQAFQVGMPLPGRC
RGLLRPKTLLLTSAEIFLLDEDFVHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYQ
TYPQALTLVFDDVQGHDLMGSVTLDHFGEEPGGPARAGQGREVQWQVFIPSAESREKLIS
LLARQWEALCGRELPVELTG
NT seq 4563 nt   +upstreamnt  +downstreamnt
atggcggccgcggcgcgcagcttcgggcccgaaccggaggccgagccggccaaggaggct
cgcgtcgtgggctctgagctcgtggacacgtatacggtttacatcatccaagtcactgat
gggagccatgaatggacagtcaagcaccgctacagtgatttccatgacctacatgaaaag
cttgttgcagagaagaagattgataaaagtctgcttccgcccaaaaagataattgggaaa
aactcaaggagcttggtggaaaagagggagaaggatctggaggtctacctccagacactc
ctggccaccttccctgacgtggccccccgagtgctggcccacttcttgcattttcacttc
tacgagattaatggcatcactgcagcactggctgaggagctttttgaaaaaggagaacag
ctcctgggggccggcgaggtctttgccatcgggcccctgcagctctatgcggtcactgag
cagctgcagcagggaaagcccacgtgcgccagtggggatgccaagactgacctggggcac
atcctggacttcacctgtcgccttaagtaccttaaggtttctggcacagaaggacctttt
gggaccagcaacattcaggagcagcacctgccatttgatctgtcaatattcaagtctctt
catcaggttgagataagtcactgtgatgccaagcacatccgggggctggtcgcatcaaag
cccaccttagccacaatgagcgtctgcttctcagcaacctccatgaaggaagtccttgtt
cctgaagcctcagaatttgatgagtgggagccagcaggggcagccctggagggccctgtg
actgccatcatccccacatggcaggcgctgactgctctggacttgagtcataacagcatc
tccgagatcgacgagtctgtgaaacttattccaaagattgagttcctggatctgagtcac
aatggagtgctggttgtggataatctgcagcacctgtataaccttgtgcacctggacctg
tcctacaataagctctcctccttggaaggcgttcacaccaaactgggcaacattaagacc
ctgaacctggcgggcaacctcctggggagtctgcatggcctgcacaagctctactctctg
gtcaacttggatctcagcaacaacagaatcgagcagatggaggaggtcaggagcattggc
agcctcccgtgtctggagcacgtggctctgctgaacaaccctctgagcatcatcccagac
taccggaccaaggtgctggctcagtttggagagcgggcatccgaggtctgtctggacaac
acagtgaccacagagaaggagttggacacagtggaagtgctaaaagcgattcagaaagcc
aaggaggtcaagtccaaactaagcaacactgagaagaaggtcagtgaggattccaggctc
tctgctgccacctgcatcagacccagtggctcccctcccacggtggctcccacctcagcc
tccctgccccagcctattctctccaaccaaggaatcatgttcgtgcaagaggaggccctg
gccagcagcctctcatccacagacagtctgactcccgaggaccggcccattgcccggggc
tgctccgattccttggagtccatccctgcgggacaggcactttgcgatgagataagggat
gtgccgggggctgttggtggtgcaagcccggagcactcagagccagaggtccaggtggtg
cccggttccggccagatcatcttcctgcccttcacctgcattggctacactgctaccaac
caggacttcatccagcgcctgagcacgctcatccggcaagccattgagcggcagctgcct
gcttggatcgaggctgccaaccagcgagaggagggccgaggcgagcagggcgaggaggag
gaagaagaggaggaggaggatgttgccgagaatcgctacttcgaaatggggcccccggac
gtggaggaagaggaggagggtgggccaggagaggaggaggaggaagaggaggaagaggag
gaggaggagggcgaggagggcgaggaggagaggctggctctggagtgggccctgggcgca
gatgaggacttcctgctggagcacatccgcatcctcaaggtgctctggtgcttcctgatc
catgtgcagggcagtatccgccagttcgccgcctgcctcgtgctcacagactttggcatt
gcggtcttcgagatcccgcaccaggagtccaggggcagcagccagcacatcctctcctcc
ctgcgctttgtgttctgcttcccgcatggcgacctcaccgagttcggcttcctcatgccg
gagctgtgcctggtgctcaaggtgcggcacagtgagaacacgctcttcatcatttcagat
gccaccaacctgcacgagttccacgctgacctgcgctcgtgtttcgcaccacaacacatg
gccatgctgtgcagccccgtgctctatggcagccacaccagcctgcaggagttcctgcgc
cagctgctcaccttctacaaagtggcgggtggctgccaggagcgcagccaaggctgcttc
cccgtctacctggtctacagtgacaagcgcatggtgcagacagctgccggggactactcg
ggcaacatcgagtgggcaagctgcacgctctgctcagccgtgcggcgctcctgctgtgcc
ccctctgaggcggtcaagtccgccgccatcccctactggttgctgctcacaccccagcac
ctcaacgtcatcaaggctgacttcaacccaatgcccaaccgcggcacccacaactgtcgc
aaccgcaacagcttcaagctcagccgtgtgccgctctccaccgtgctgctggaccccaca
cgcagctgcacacagccacggggcgccttcgctgatggccacgtgctcgagctgctggtg
ggctaccgctttgtcactgccatctttgtgctgccccacgagaagttccatttcctgcga
atctacaaccagctgcgagcctcactgcaggacctgaagaccgtggtcatcgccaagacc
cctgcgaccgggggcaggcctcagagccccctcgcggatggccagcccacagagggcagg
gccagcgatgaccagcatctccaggaggccctggaagaagttccagtcccagctctggcc
ccagcagaggccccaggcctggcaaagatcccagctccagcggaggcctcagagccagct
ttggtcctgccagaggcccccacagaggcttccgcctcagaggagaccccagcagaggcc
tcagcaggggcctcagtcccggccccagcagagggcacggcacaagctgaggcccctgcc
cagtacccaagtgaacgcctgatccagtccatgtcggaggagaatcagattccctcgcac
ctgcctgcctgcccgtccctccagcacattgccagcctgcaggggagtgccgtcgtcgag
ttcttccacaacagcattgctgaggtggaaaatgaggagctgcgacacctcctgtggtca
tcagtggtgttctaccagaccccggggctggaggtgacagcctgcgtgctgctctccaca
aaggctgtgtactttgtgctgcatgacggcctccgccgctacttttctgagccgctgcag
gatttctggcatcagaaaaacaccgactacaacaacagtccattccacatctcccagtgc
tttgttttaaaactcagcgacctgcagacagtcaacgttgggcttttcgaccagtatttc
cggctgactggttcctccccggcgcaggtggttacatgcttgacacgggacagctacctg
acacactgcttcctccagcacgtcatggctgtgctgtccctgctagaacgcacaccctct
cctgagcctgtcgacaaagacttctactctgagtttggaaacaagaccacaggaaaggtg
gagaactacgagctgatccactcgagccgcgtcaagttcacctaccccagcgaggaggag
atcggggacctgacgttcactgtggcccagaagatggctgacccagagaaggcaccgggc
ctcagcatcctgctgtacgtgcaagctttccaggtgggcatgccactacctgggcgctgt
aggggcctgctgcgccccaagacgttgctgctcaccagcgccgagatcttccttctggat
gaggacttcgtccactacccgctgcccgagttcgccaaggagcctccacagagggaccgg
taccgactggatgatggccgccgcgtccgggacctggaccgcgtgctcatgggctaccag
acatacccgcaggccctcaccctggtctttgatgatgttcagggccacgacctcatgggc
agcgtcaccctggaccactttggggaggagccagggggcccagccagagctggccagggc
cgcgaggtccagtggcaagtgttcatccctagtgctgagagccgcgagaagctcatctca
ctgttagcccgccagtgggaggctctgtgcggccgggagctgcccgtggaactcaccggc
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (8)   
   UniProt (2)   
   RefSeq(pep) (6)   
DNA sequence (14)   
   RefSeq(nuc) (6)   
   GenBank (4)   
   EMBL (4)   
Protein domain (4)   
   Pfam (4)   
All databases (51)   

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