KEGG   Sus scrofa (pig): 100337661
Entry
100337661         CDS       T01009                                 
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
ssc  Sus scrofa (pig)
Pathway
ssc01524  Platinum drug resistance
ssc03430  Mismatch repair
ssc05200  Pathways in cancer
ssc05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    100337661 (MSH2)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100337661 (MSH2)
  09162 Cancer: specific types
   05210 Colorectal cancer
    100337661 (MSH2)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    100337661 (MSH2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssc03400]
    100337661 (MSH2)
DNA repair and recombination proteins [BR:ssc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     100337661 (MSH2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I AAA_27 FeoA
Other DBs
NCBI-GeneID: 100337661
NCBI-ProteinID: NP_001182286
Ensembl: ENSSSCG00000008430
UniProt: D3K5K3
Position
3:complement(93082958..93163556)
AA seq 934 aa
MAVQPKETLQLESAAEIGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVVKFMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKEHDWYLA
FKASPGNLSQFEDILFGNNDMSAPIGVVGVKMSTVDGQRQVGVGYVDSIQRKLGLCEFPD
NDQLSNLEALLIQIGPKECVLPGGDTAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLADDSNFGQFELTTFDFSQYM
KLDMAAVRALNLFQGSVEDTAGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
MEKYEGQHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILEKGQGRITLKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIPEYIATKIGAFCMF
ATHFHELTALANQIPAVNNLHVAALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGAPQEHDEMEPAAKRCYLEREQGEKIIQEFVSKVKQVPFTEMS
EENITMKLKQLKAEVMAKNNSFVNEIISRIKVTT
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggcggtgcagccgaaggagacactgcagctggagagcgcagccgagatcggcttcgtg
cgcttcttccagggcatgcctgagaagccgaccaccacggtgcgccttttcgaccggggc
gacttctacaccgcgcacggcgaggacgcactcctagctgcccgggaggtgttcaagacc
cagggggtggtcaagttcatggggccggcaggagcaaagactctggagagtgttgtgctt
agtaaaatgaattttgaatcttttgtaaaagatcttcttctagttcgtcaatacagagtt
gaagtttataagaatagagctggaaataaggcctccaaggagcatgactggtatttggca
tttaaggcttcgccaggtaatctttctcaatttgaagacattctctttggtaacaatgat
atgtcagctcccatcggtgtcgtgggtgttaagatgtctacagttgatggccagagacag
gttggagttggatatgttgactccatacagcggaagctaggactgtgtgagtttcctgat
aatgatcagctctccaatctggaggctctcctgattcagattggaccgaaggaatgtgtt
ttaccaggaggagatactgctggagacatgggaaaactgaggcaggttattcagagagga
ggaattctaatcacagaaagaaaaagagctgacttttctacaaaagatatttatcaggac
ctcaaccggctgttgaaaggcaaaaagggagaacagatgaatagtgctgtattgccagaa
atggagaatcaagttgcagtttcttcattgtctgctgtaatcaagtttttagaactctta
gcagatgactcaaactttggacagttcgaactgactacttttgacttcagccagtacatg
aaattggatatggcagcagtaagagcccttaaccttttccagggttctgttgaagatact
gctggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctagttaaccagtggattaagcagcctctcatggacaagaacagaatagaagagagatta
aatttagtggaagcatttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcagcaaac
ttacaagattgttaccgactctatcagggtataaatcaactccctaatgttattcaggct
atggaaaaatatgaaggacaacatcaggcattgttgttggcagtttttgtgactcctctt
attgatcttcgttctgatttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggagaaccatgaattccttgtaaaaccttcatttgatcctaacctgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattaataagtgcagct
agagacctaggtttggatcctggcaaacagattaaactggattccagtgcacaatttgga
tattattttcgtgtaacgtgcaaggaagaaaaagtccttcgcaataataaaaatttcagt
acagtggatatccagaagaatggtgttaaatttaccaacagtaaattgacttctctcaat
gaagagtataccaaaaataaaaccgagtacgaggaagcccagaatgccattgttaaagaa
attgtcaatatttcttcaggctatgtagaaccgatgcagacactcaatgatgtgttggct
cagctagatgccgttgtcagctttgctcatgtgtcaaacggagcacctgtcccatatgtg
cggccggtcattttggagaaaggacaagggagaattacactgaaagcatccagacatgct
tgtgttgaagttcaagatgaagttgcatttattcctaatgatgttcactttgaaaaagat
aagcagatgttccacataattactggtcccaatatgggaggtaaatcaacatatattcgc
cagactggggtagtagttcttatggcccaaattgggtgttttgtgccgtgtgaatcagca
gaagtgtccattgtggactgcatcttggcccgggtaggggctggtgacagccaactgaaa
ggagtctccacattcatggctgaaatgttagagactgcttctattctcaggtctgcaacc
aaagattctttaataatcatagatgaattgggaagaggaacctctacctatgatggattt
gggttagcgtgggctataccagagtacattgcaacaaagatcggtgctttttgcatgttt
gcaacccattttcatgaacttactgccttagccaatcagataccagctgttaataatcta
catgtcgcagcactaactactgaggagaccttaactatgctttatcaggtgaagaaaggt
gtctgtgatcaaagttttgggattcacgttgccgagcttgctaatttccccaggcatgta
atagagtgtgctaaacaaaaagccctggaactagaggagtttcagaatattggggcacca
caggagcatgatgaaatggaaccagcggcaaagagatgctatctggaaagagagcaaggt
gaaaaaattattcaggagttcgtatccaaggtgaagcaagtgccctttactgaaatgtca
gaagaaaacatcacaatgaagttaaaacagctgaaagctgaggtgatggcaaagaataat
agtttcgtaaatgaaatcatttcacgaataaaggttactacgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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